Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_E03
(462 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC010939-1|AAH10939.1| 306|Homo sapiens poly(A) binding protein... 68 1e-11
AF026029-1|AAC39596.1| 306|Homo sapiens poly(A) binding protein... 68 1e-11
M33308-1|AAA61283.1| 1066|Homo sapiens VCL protein. 31 1.9
BX537994-1|CAD97952.1| 222|Homo sapiens hypothetical protein pr... 31 1.9
BC039174-1|AAH39174.1| 1066|Homo sapiens vinculin protein. 31 1.9
AL731576-5|CAI39673.1| 1066|Homo sapiens vinculin protein. 31 1.9
AL596247-9|CAI13972.1| 1066|Homo sapiens vinculin protein. 31 1.9
M83822-1|AAB09603.1| 1918|Homo sapiens beige-like protein protein. 30 3.4
AF467287-1|AAM53530.1| 2851|Homo sapiens beige-like protein prot... 30 3.4
AF216648-1|AAG48558.2| 2863|Homo sapiens LPS responsive and Beig... 30 3.4
AK025336-1|BAB15114.1| 963|Homo sapiens protein ( Homo sapiens ... 29 5.9
AB032945-1|BAA86433.2| 1854|Homo sapiens KIAA1119 protein protein. 29 5.9
>BC010939-1|AAH10939.1| 306|Homo sapiens poly(A) binding protein,
nuclear 1 protein.
Length = 306
Score = 68.1 bits (159), Expect = 1e-11
Identities = 34/48 (70%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Frame = +1
Query: 316 GDEMTGA-EVPDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPG 456
GD GA E P+L AIKARVREMEEEAEKLK++Q EV+KQM+M PPG
Sbjct: 107 GDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPG 154
>AF026029-1|AAC39596.1| 306|Homo sapiens poly(A) binding protein II
protein.
Length = 306
Score = 68.1 bits (159), Expect = 1e-11
Identities = 34/48 (70%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
Frame = +1
Query: 316 GDEMTGA-EVPDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPPG 456
GD GA E P+L AIKARVREMEEEAEKLK++Q EV+KQM+M PPG
Sbjct: 107 GDPGDGAIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPG 154
>M33308-1|AAA61283.1| 1066|Homo sapiens VCL protein.
Length = 1066
Score = 31.1 bits (67), Expect = 1.9
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +1
Query: 184 QVPNSCFR--QIVEMAENDDYLDSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAA 357
+V N+C + Q +M ++D Y + +DG+ G L+ T + L DE AEV +
Sbjct: 80 KVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDE---AEVRKIIR 136
Query: 358 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLT 462
+ + E AE ++ M+ V ++G PG+T
Sbjct: 137 VCKGILEYLTVAEVVETMEDLVTYTKNLG--PGMT 169
>BX537994-1|CAD97952.1| 222|Homo sapiens hypothetical protein
protein.
Length = 222
Score = 31.1 bits (67), Expect = 1.9
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +1
Query: 184 QVPNSCFR--QIVEMAENDDYLDSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAA 357
+V N+C + Q +M ++D Y + +DG+ G L+ T + L DE AEV +
Sbjct: 7 KVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDE---AEVRKIIR 63
Query: 358 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLT 462
+ + E AE ++ M+ V ++G PG+T
Sbjct: 64 VCKGILEYLTVAEVVETMEDLVTYTKNLG--PGMT 96
>BC039174-1|AAH39174.1| 1066|Homo sapiens vinculin protein.
Length = 1066
Score = 31.1 bits (67), Expect = 1.9
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +1
Query: 184 QVPNSCFR--QIVEMAENDDYLDSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAA 357
+V N+C + Q +M ++D Y + +DG+ G L+ T + L DE AEV +
Sbjct: 80 KVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDE---AEVRKIIR 136
Query: 358 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLT 462
+ + E AE ++ M+ V ++G PG+T
Sbjct: 137 VCKGILEYLTVAEVVETMEDLVTYTKNLG--PGMT 169
>AL731576-5|CAI39673.1| 1066|Homo sapiens vinculin protein.
Length = 1066
Score = 31.1 bits (67), Expect = 1.9
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +1
Query: 184 QVPNSCFR--QIVEMAENDDYLDSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAA 357
+V N+C + Q +M ++D Y + +DG+ G L+ T + L DE AEV +
Sbjct: 80 KVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDE---AEVRKIIR 136
Query: 358 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLT 462
+ + E AE ++ M+ V ++G PG+T
Sbjct: 137 VCKGILEYLTVAEVVETMEDLVTYTKNLG--PGMT 169
>AL596247-9|CAI13972.1| 1066|Homo sapiens vinculin protein.
Length = 1066
Score = 31.1 bits (67), Expect = 1.9
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = +1
Query: 184 QVPNSCFR--QIVEMAENDDYLDSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAA 357
+V N+C + Q +M ++D Y + +DG+ G L+ T + L DE AEV +
Sbjct: 80 KVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDE---AEVRKIIR 136
Query: 358 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLT 462
+ + E AE ++ M+ V ++G PG+T
Sbjct: 137 VCKGILEYLTVAEVVETMEDLVTYTKNLG--PGMT 169
>M83822-1|AAB09603.1| 1918|Homo sapiens beige-like protein protein.
Length = 1918
Score = 30.3 bits (65), Expect = 3.4
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +1
Query: 181 NQVPNSCFRQIVEMAENDDYLD-SIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAA 357
+++P + IVE E+DDY++ ++ + + N + DNSL G ++ D+
Sbjct: 317 SEMPEFLDKSIVEEEEDDDYVELKVEGSPTEEANLPTELQDNSLSPAASEAGEKL-DMFG 375
Query: 358 IKARVREMEEEAEKLKQMQTEVDKQMSMGS 447
++ + +E + + + QT+ + Q S S
Sbjct: 376 NDDKL--IFQEGKPVTEKQTDTETQDSKDS 403
>AF467287-1|AAM53530.1| 2851|Homo sapiens beige-like protein protein.
Length = 2851
Score = 30.3 bits (65), Expect = 3.4
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +1
Query: 181 NQVPNSCFRQIVEMAENDDYLD-SIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAA 357
+++P + IVE E+DDY++ ++ + + N + DNSL G ++ D+
Sbjct: 1091 SEMPEFLDKSIVEEEEDDDYVELKVEGSPTEEANLPTELQDNSLSPAASEAGEKL-DMFG 1149
Query: 358 IKARVREMEEEAEKLKQMQTEVDKQMSMGS 447
++ + +E + + + QT+ + Q S S
Sbjct: 1150 NDDKL--IFQEGKPVTEKQTDTETQDSKDS 1177
>AF216648-1|AAG48558.2| 2863|Homo sapiens LPS responsive and
Beige-like anchor protein LRBA protein.
Length = 2863
Score = 30.3 bits (65), Expect = 3.4
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +1
Query: 181 NQVPNSCFRQIVEMAENDDYLD-SIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAA 357
+++P + IVE E+DDY++ ++ + + N + DNSL G ++ D+
Sbjct: 1091 SEMPEFLDKSIVEEEEDDDYVELKVEGSPTEEANLPTELQDNSLSPAASEAGEKL-DMFG 1149
Query: 358 IKARVREMEEEAEKLKQMQTEVDKQMSMGS 447
++ + +E + + + QT+ + Q S S
Sbjct: 1150 NDDKL--IFQEGKPVTEKQTDTETQDSKDS 1177
>AK025336-1|BAB15114.1| 963|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21683 fis, clone COL09335. ).
Length = 963
Score = 29.5 bits (63), Expect = 5.9
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +1
Query: 226 ENDDYLDSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREMEEEAEKLK 405
E+D SI + + T +L + G E ++ ++ RVRE+E+E +KL
Sbjct: 249 ESDSNYPSISTSEIGDTEDALQQVEEI---GLEKAAMDMTVFLKLQKRVRELEQERKKL- 304
Query: 406 QMQTEVDKQ 432
Q+Q E +Q
Sbjct: 305 QVQLEKREQ 313
>AB032945-1|BAA86433.2| 1854|Homo sapiens KIAA1119 protein protein.
Length = 1854
Score = 29.5 bits (63), Expect = 5.9
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +1
Query: 226 ENDDYLDSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREMEEEAEKLK 405
E+D SI + + T +L + G E ++ ++ RVRE+E+E +KL
Sbjct: 1114 ESDSNYPSISTSEIGDTEDALQQVEEI---GLEKAAMDMTVFLKLQKRVRELEQERKKL- 1169
Query: 406 QMQTEVDKQ 432
Q+Q E +Q
Sbjct: 1170 QVQLEKREQ 1178
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,528,069
Number of Sequences: 237096
Number of extensions: 1057552
Number of successful extensions: 3361
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3361
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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