Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_E03
(462 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 42 2e-04
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 41 4e-04
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 41 4e-04
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 39 0.001
At3g44820.1 68416.m04829 phototropic-responsive NPH3 family prot... 30 0.66
At1g67170.1 68414.m07641 expressed protein similar to enterophil... 30 0.66
At2g34260.2 68415.m04192 transducin family protein / WD-40 repea... 30 0.88
At3g02990.1 68416.m00294 heat shock factor protein 2 (HSF2) / he... 29 1.2
At1g72760.1 68414.m08413 protein kinase family protein contains ... 29 1.5
At5g16720.1 68418.m01958 expressed protein contains Pfam profile... 29 2.0
At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)... 28 2.7
At2g25650.1 68415.m03074 DNA-binding storekeeper protein-related... 28 3.5
At5g14270.1 68418.m01669 DNA-binding bromodomain-containing prot... 27 4.7
At3g56720.1 68416.m06309 expressed protein 27 4.7
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 27 4.7
At1g79150.1 68414.m09229 expressed protein ; expression supporte... 27 6.2
At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family pr... 27 8.2
At3g50870.1 68416.m05570 zinc finger (GATA type) family protein ... 27 8.2
At1g77580.2 68414.m09032 myosin heavy chain-related low similari... 27 8.2
At1g77580.1 68414.m09033 myosin heavy chain-related low similari... 27 8.2
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 41.9 bits (94), Expect = 2e-04
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +1
Query: 214 VEMAENDDYLDSI-DNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREMEEE 390
+E E++ Y I D +DG +LN D + D+ V +L +K R++EME+E
Sbjct: 1 MEEEEHEVYGGEIPDVGEMDGDMEALN-PDLDMAAADDDA---VKELDEMKKRLKEMEDE 56
Query: 391 AEKLKQMQTEVDKQMSMGSPPGL 459
A L++MQ +V+K+M P +
Sbjct: 57 AAALREMQAKVEKEMGAQDPASI 79
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 41.1 bits (92), Expect = 4e-04
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +1
Query: 340 VPDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPP 453
V +LA +K R++EMEEEA L++MQ +V+K+M P
Sbjct: 36 VTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDP 73
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 41.1 bits (92), Expect = 4e-04
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +1
Query: 340 VPDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPP 453
V +LA +K R++EMEEEA L++MQ +V+K+M P
Sbjct: 36 VTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDP 73
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 39.1 bits (87), Expect = 0.001
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 298 DNSLGGGDEMT-GAEVPDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPP 453
+ + G +E+ G+ DL +K R++E+EEEA L++MQ + +K M P
Sbjct: 36 EGAAAGDEELEPGSSSRDLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDP 88
>At3g44820.1 68416.m04829 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 661
Score = 30.3 bits (65), Expect = 0.66
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 346 DLAAIKARVREMEEEAEKLKQ-MQTEVDKQMSMGSPPGL 459
D+ +++RV E+EEE + +KQ M+ V K S S P L
Sbjct: 569 DMQKMRSRVGELEEEFQSIKQEMKKRVSKSSSSMSSPRL 607
>At1g67170.1 68414.m07641 expressed protein similar to
enterophilin-2L (GI:12718845) [Cavia porcellus]; similar
to Hyaluronan mediated motility receptor (Intracellular
hyaluronic acid binding protein) (Receptor for
hyaluronan-mediated motility) (CD168 antigen)
(Swiss-Prot:O75330) [Homo sapiens]
Length = 359
Score = 30.3 bits (65), Expect = 0.66
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1
Query: 247 SIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQMQTEVD 426
+I+N L GT+GSL + +M A++ + + R + M AEK+ +M+TE+
Sbjct: 73 AIENQRLGGTHGSLRQELAAAQHEIQMLHAQIGSMKS--EREQRMMGLAEKVAKMETELQ 130
Query: 427 K 429
K
Sbjct: 131 K 131
>At2g34260.2 68415.m04192 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 296
Score = 29.9 bits (64), Expect = 0.88
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = +1
Query: 115 LFFKWVIGIITGLVTEC*CSVYNQVPNSCFRQIVEMAENDDYLDSIDNNHLDGTNGSLNM 294
+FF WV+GI+T CS+ + E + ++N H D N +N+
Sbjct: 1 MFFCWVLGIVTASAD---CSI-----------LATDVETGAQVAHLENAHEDAVNTLINV 46
Query: 295 TDNSLGGGDE 324
T+ ++ GD+
Sbjct: 47 TETTIASGDD 56
>At3g02990.1 68416.m00294 heat shock factor protein 2 (HSF2) / heat
shock transcription factor 2 (HSTF2) identical to heat
shock transcription factor 2 (HSF2) SP:Q96320 from
[Arabidopsis thaliana]; contains Pfam profile: PF00447
HSF-type DNA-binding domain
Length = 468
Score = 29.5 bits (63), Expect = 1.2
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Frame = +1
Query: 172 SVYNQVPNSCFRQIVEM--AENDDYLDSIDNNHLDGTNGSLNMTDN--SLGGGDEMTGAE 339
S N N+ +QI +M A + + L S + + L G + N++DN S G E+T A+
Sbjct: 253 SSMNDATNTMLQQIQQMSNAPSHESLSSNNGSFLLGDVPNSNISDNGSSSNGSPEVTLAD 312
Query: 340 VPDLAAIKARVREMEEEAEKLKQMQTEVDKQMSMGSPP 453
V + A + E E + M+T + PP
Sbjct: 313 VSSIPAGFYPAMKYHEPCETNQVMETNLPFSQGDLLPP 350
>At1g72760.1 68414.m08413 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 697
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 352 AAIKARVREMEEEAEKLKQMQTEVDKQM 435
A I R+ +ME + +L +MQ +DKQM
Sbjct: 333 AEIAKRIAKMESQKRRLLEMQANLDKQM 360
>At5g16720.1 68418.m01958 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 675
Score = 28.7 bits (61), Expect = 2.0
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 241 LDSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQMQTE 420
LD+ +N DG+ G L +D G D + + ++ R++E+E + E LK +
Sbjct: 579 LDAAENESEDGSQG-LPESDEKNFGSDSEKLEIIKQVDSVYERLQELETDGEFLKNCMSS 637
Query: 421 VDK 429
K
Sbjct: 638 AKK 640
>At3g18524.1 68416.m02355 DNA mismatch repair protein MSH2 (MSH2)
identical to SP|O24617 DNA mismatch repair protein MSH2
(AtMsh2) {Arabidopsis thaliana}
Length = 937
Score = 28.3 bits (60), Expect = 2.7
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 223 AENDDYLDS--IDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREMEEEAE 396
AE +D+ S I NN G S + + G E + + AAI E+++ +
Sbjct: 855 AELEDFSPSSMIINNEESGKRKSREDDPDEVSRGAERAHKFLKEFAAIPLDKMELKDSLQ 914
Query: 397 KLKQMQTEVDK 429
++++M+ E++K
Sbjct: 915 RVREMKDELEK 925
>At2g25650.1 68415.m03074 DNA-binding storekeeper protein-related
contains similarity to storekeeper protein [Solanum
tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
Protein of unknown function, DUF573
Length = 386
Score = 27.9 bits (59), Expect = 3.5
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 244 DSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPD-LAAIKARVREMEEEAEKLKQMQTE 420
+ + N L NG+ T+N GG E + D L A++ + + Q + +
Sbjct: 280 EEVANTELVNENGAAKTTENGTTGGKERHDDDDDDELCAVQDAFEAVMSQGLSGYQKKLQ 339
Query: 421 VDKQMSMGS 447
++K M++G+
Sbjct: 340 LEKLMNLGT 348
>At5g14270.1 68418.m01669 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 688
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +1
Query: 265 LDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQMQTE 420
LDG + +S+GG D++ A +++++A ++ A+ KQ+ E
Sbjct: 454 LDGATSASPTRGSSVGGLDQLESASPEKISSVEADCQQDGNSAQNEKQLPPE 505
>At3g56720.1 68416.m06309 expressed protein
Length = 386
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +1
Query: 316 GDEMTGAEVPDLAAIKARVREMEE-----EAEKLKQMQTEVDKQMSMG 444
GD + L +KA+V E+ EAEK K++Q +++KQ + G
Sbjct: 326 GDPERQEKFNKLMGVKAKVVNQEQNLGEVEAEKQKELQMDLEKQYTAG 373
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 27.5 bits (58), Expect = 4.7
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +1
Query: 205 RQIVEMAENDDYLDSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAA-IKARVREM 381
R + +EN+ +D + DGT+ + N D+S G+ T + +A V EM
Sbjct: 233 RSVFLESENEAEVDRTETESEDGTDSTDNEIDDSDEEGESETQCSAEKTGSETEANVEEM 292
Query: 382 EEEAE-KLKQMQTEVDKQM 435
+ ++ +Q E QM
Sbjct: 293 RADTNVTMEAVQNESRNQM 311
>At1g79150.1 68414.m09229 expressed protein ; expression supported
by MPSS
Length = 495
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 172 SVYNQVPNSCFRQIVEMAENDDYLDSI 252
SVYNQ+ N C ++E + +Y D++
Sbjct: 291 SVYNQIANRCLCTLLEAVPHFNYRDNL 317
>At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 760
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +1
Query: 235 DYLDSIDNNHLDGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQM 411
D + S+DNNHL+ L + N D + + + I+++ + EE+ E+ +Q+
Sbjct: 159 DDITSLDNNHLESIIQMLGLISNQ----DLLKESITVEKERIRSQASKSEEDMEQTEQL 213
>At3g50870.1 68416.m05570 zinc finger (GATA type) family protein
Arabidopsis thaliana mRNA for GATA transcription factor
3, PID:e1254739
Length = 295
Score = 26.6 bits (56), Expect = 8.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 325 FHHHPQDCCQSCSRN 281
FHHH Q CC + + N
Sbjct: 21 FHHHSQSCCYNNNNN 35
>At1g77580.2 68414.m09032 myosin heavy chain-related low similarity
to SP|P08799 Myosin II heavy chain, non muscle
{Dictyostelium discoideum}
Length = 779
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/56 (23%), Positives = 33/56 (58%)
Frame = +1
Query: 268 DGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQMQTEVDKQM 435
+G +G ++T+ + + +E+ L + R++E+EE+ EKL+ + E++ ++
Sbjct: 321 NGKSGPESVTEEVVVPSENSLASEIEVLTS---RIKELEEKLEKLEAEKHELENEV 373
>At1g77580.1 68414.m09033 myosin heavy chain-related low similarity
to SP|P08799 Myosin II heavy chain, non muscle
{Dictyostelium discoideum}
Length = 629
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/56 (23%), Positives = 33/56 (58%)
Frame = +1
Query: 268 DGTNGSLNMTDNSLGGGDEMTGAEVPDLAAIKARVREMEEEAEKLKQMQTEVDKQM 435
+G +G ++T+ + + +E+ L + R++E+EE+ EKL+ + E++ ++
Sbjct: 287 NGKSGPESVTEEVVVPSENSLASEIEVLTS---RIKELEEKLEKLEAEKHELENEV 339
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,842,844
Number of Sequences: 28952
Number of extensions: 159056
Number of successful extensions: 643
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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