Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E01
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...   103   1e-23
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    26   1.8  
SPBC15D4.04 |gpt2|gpt, alg7|UDP-N-acetylglucosamine--dolichyl-ph...    25   4.3  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    24   9.8  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score =  103 bits (246), Expect = 1e-23
 Identities = 49/92 (53%), Positives = 64/92 (69%), Gaps = 3/92 (3%)
 Frame = +2

Query: 125 KAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGL-SKGKHGFHVHEFGDNTNGCTSAG 295
           +AV VL GD  VSG V F+Q D++S V V  ++ G  +  K GFH+H+FGDNTNGCTSAG
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62

Query: 296 AHFNPLKQEHGAPDSDTRHIGDLGNIEASSDG 391
            HFNP  + HG   +  RH+GDLGN+E+ + G
Sbjct: 63  PHFNPEGKTHGDRTAAVRHVGDLGNLESDAQG 94


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 15/69 (21%), Positives = 29/69 (42%)
 Frame = +2

Query: 143 HGDVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQE 322
           H     +++FD  DE +    +  +  +++   G +  +  +  NG  S     N  K+E
Sbjct: 24  HPSAGDSIYFDSLDEDADPSRTARIDRIAELLDGLNDEQISELVNGVNSTTIKEN-TKKE 82

Query: 323 HGAPDSDTR 349
              P+  TR
Sbjct: 83  ISNPNDSTR 91


>SPBC15D4.04 |gpt2|gpt,
           alg7|UDP-N-acetylglucosamine--dolichyl-phosphateN-
           acetylglucosaminephosphotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 213 KSKDLVRASTVSMYMSLVTIPTVAPLLE 296
           K+KD +RA  +S+Y+ L  I   A LL+
Sbjct: 247 KNKDALRAHLLSLYLVLPLIGVTAGLLK 274


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = -3

Query: 361 VSNVTSIRIRCTMLLL*WVEVSSSRGATVGIVTKLMYMETVLALTKSF 218
           +S V ++ I CTM+   +   ++S+G T G      ++    +  +S+
Sbjct: 216 ISGVVALSIVCTMVSTGYFYFANSKGYTTGSKVFAFFLSLAQSARQSY 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,576,075
Number of Sequences: 5004
Number of extensions: 29646
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)