Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_E01
(396 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 111 2e-25
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 108 2e-24
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 105 1e-23
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 104 3e-23
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 52 2e-07
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 40 5e-04
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 29 1.0
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 27 4.1
09_06_0071 - 20675501-20675830,20676120-20676286,20676472-206766... 27 7.2
01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997 26 9.6
01_03_0047 + 11939747-11939857,11940058-11940121,11940123-119402... 26 9.6
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 111 bits (267), Expect = 2e-25
Identities = 52/91 (57%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Frame = +2
Query: 125 KAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGA 298
KAV VL V GT+FF Q+ + P V+G V GL G HGFHVH GD TNGC S G
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGDG-PTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGP 61
Query: 299 HFNPLKQEHGAPDSDTRHIGDLGNIEASSDG 391
HFNP +EHGAP + RH GDLGNI A +DG
Sbjct: 62 HFNPTGKEHGAPQDENRHAGDLGNITAGADG 92
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 108 bits (259), Expect = 2e-24
Identities = 49/91 (53%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Frame = +2
Query: 125 KAVCVLHGD--VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGA 298
KAV VL V GT+ F Q+ + P V+G V GL G HGFH+H GD TNGC S G
Sbjct: 121 KAVVVLGSSEIVKGTIHFVQEGDG-PTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGP 179
Query: 299 HFNPLKQEHGAPDSDTRHIGDLGNIEASSDG 391
H+NP +EHGAP+ +TRH GDLGN+ A DG
Sbjct: 180 HYNPAGKEHGAPEDETRHAGDLGNVTAGEDG 210
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 105 bits (252), Expect = 1e-23
Identities = 50/91 (54%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Frame = +2
Query: 125 KAVCVLHG--DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGA 298
KAV VL G V G V Q D+ P V+ V GL+ G HGFH+HEFGD TNGC S G
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQ-DDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGP 111
Query: 299 HFNPLKQEHGAPDSDTRHIGDLGNIEASSDG 391
HFNP HGAP+ + RH GDLGNI A+++G
Sbjct: 112 HFNPNNLTHGAPEDEVRHAGDLGNIVANAEG 142
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 104 bits (249), Expect = 3e-23
Identities = 44/80 (55%), Positives = 52/80 (65%)
Frame = +2
Query: 152 VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHGA 331
V+G + F Q + V G V GL+ G HGFH+H FGD TNGC S G HFNP + HGA
Sbjct: 23 VAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGA 82
Query: 332 PDSDTRHIGDLGNIEASSDG 391
P D RH+GDLGNI A+ DG
Sbjct: 83 PSDDERHVGDLGNIVANKDG 102
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 52.0 bits (119), Expect = 2e-07
Identities = 26/64 (40%), Positives = 33/64 (51%)
Frame = +2
Query: 200 VVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHGAPDSDTRHIGDLGNIEA 379
+V GLS GKHG+ ++EFGD T G S G +NP P +GDLG +EA
Sbjct: 191 IVEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP------LGDLGTLEA 244
Query: 380 SSDG 391
G
Sbjct: 245 GEKG 248
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 40.3 bits (90), Expect = 5e-04
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = +2
Query: 188 SSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAG 295
SS + V V GL HGFHVH G TNGC G
Sbjct: 34 SSLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 266 DNTNGCTSAGAHFNPLKQEHGAPDSDTRHIGDLGNIEASS 385
D TS GAH +PL+ H +P S + + A+S
Sbjct: 15 DIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSSSSATS 54
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 200 VVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHGAPDSDTRH 352
++S VK +GK G ++H GC G + + H AP + H
Sbjct: 488 LISNAVKFTHEGKVGINLHVLDKQLPGCRIEGGQLH--SKAHSAPAAAAEH 536
>09_06_0071 -
20675501-20675830,20676120-20676286,20676472-20676619,
20676768-20677205,20677667-20677741,20678000-20678283,
20678940-20679159
Length = 553
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 380 KLQYFLGLQCDEYPNQVHHAPALVG*SELQQRCNRW-YCHQTHVHGNRA 237
KL Y +G YP QVHH A + ++ + C + Y H T + N A
Sbjct: 455 KLSYLVGYG-SSYPQQVHHRGASIP-ADAKTGCKGFQYLHSTSPNPNVA 501
>01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997
Length = 387
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 263 GDNTNGCTSAGAHFNPLKQEHGAPDS 340
G+N NG S G H N + G PDS
Sbjct: 111 GNNNNGYRSQGVHANESWRIPGQPDS 136
>01_03_0047 +
11939747-11939857,11940058-11940121,11940123-11940253,
11940325-11940432,11942735-11942783,11943188-11943279,
11944394-11944468,11944553-11944658,11944740-11944786,
11944856-11944913,11945299-11945348,11945728-11945784,
11945909-11945916,11946020-11946055,11946904-11946937,
11947030-11947092,11947223-11947237
Length = 367
Score = 26.2 bits (55), Expect = 9.6
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = -3
Query: 304 EVSSSRGATVGIVTKLMYMETVLALTKSFDFSRNNYW*AFILLVEENCSTHISVKNAYSF 125
+V GATVGIV Y + A+ K D N + + V E+ S S + S
Sbjct: 274 DVYREAGATVGIVDYTTYEDMKYAIRKLDDSEFRNAFSRAYIRVRESVSRSPSPVDERSI 333
Query: 124 SR 119
SR
Sbjct: 334 SR 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,079,344
Number of Sequences: 37544
Number of extensions: 192130
Number of successful extensions: 464
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -