Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_E01
         (396 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)               107   4e-24
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                40   7e-04
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.2  
SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)           27   4.2  
SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score =  107 bits (256), Expect = 4e-24
 Identities = 40/69 (57%), Positives = 50/69 (72%)
 Frame = +2

Query: 185 ESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHGAPDSDTRHIGDL 364
           E  P  ++G ++GL  G HGFH+H +GDNTNGC SAG HFNP K+EHG P  + RH+GDL
Sbjct: 24  EGKPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDL 83

Query: 365 GNIEASSDG 391
           GN+ A  DG
Sbjct: 84  GNVVAGDDG 92


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +2

Query: 323 HGAPDSDTRHIGDLGNIEASSDG 391
           HGAP+   RH+GDLGNIEA ++G
Sbjct: 2   HGAPEDKDRHLGDLGNIEADANG 24


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 272  TNGCTSAGAHFNPLKQEHGAPDSDTRHIGDLGNIEASSDG 391
            T+  +SA  HF+    +H  P S      D+  +E+ S+G
Sbjct: 3205 TSASSSAKVHFSNAASDHDEPQSPVNAFHDMKTLESFSEG 3244


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 8/23 (34%), Positives = 18/23 (78%)
 Frame = +2

Query: 170  FDQKDESSPVVVSGEVKGLSKGK 238
            +D +D  + + ++GE+KG+++GK
Sbjct: 5974 YDSRDRFAKIYINGELKGVTRGK 5996


>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
          Length = 906

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 353 CDEYPNQVHHAPALVG*SELQQRCNRWYCHQ 261
           C ++ ++V  +P +V    +   C++W+CHQ
Sbjct: 500 CHQWLSRVVLSPVVVTSGFVTSGCHQWFCHQ 530



 Score = 27.1 bits (57), Expect = 5.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 284 CNRWYCHQTHVHG 246
           C++W+CHQ   HG
Sbjct: 725 CHQWFCHQWFCHG 737



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -2

Query: 368 FLGLQCDEYPNQVHHAPALVG*SELQQRCNRWYCHQTHVH 249
           F+   C E+ ++V      V    +   C++W+CHQ   H
Sbjct: 623 FVTSGCHEWLSRVVVTSGFVTSGFVTSGCHQWFCHQWFCH 662


>SB_46813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 185 ESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHF--NPLKQEHGAPDSDTRH 352
           E S  +V GE     K + G   H+  D  +GC  +  HF  + LK+E    D+  +H
Sbjct: 167 EISDFLVEGESVWWKKVEDGVEFHDVTDIPSGCGPSLHHFRSSNLKKEAERLDNCWKH 224


>SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 73  VTT*NFLTVTYLLRHAXXXXXXXXXXXEWNSFLRPKG*KLTSSCFWRSQR 222
           VT   F T+ +L RH             + +F+RP   +L +S F RS++
Sbjct: 331 VTAKGFRTLGFLRRHCLDTFSENHKRTLYLTFVRPHFLELKASVFKRSEK 380


>SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1604

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 149 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHG--FHVHEFGDNTN 277
           DVSG+V  +Q    S   V+  V G     HG  F +H    NT+
Sbjct: 44  DVSGSVTLEQSQSRSGPYVTVAVDGTRVVLHGAVFTIHNLTSNTD 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,787,143
Number of Sequences: 59808
Number of extensions: 223585
Number of successful extensions: 555
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)