Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_E01
(396 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 127 3e-30
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 127 3e-30
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 127 3e-30
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 127 3e-30
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 120 4e-28
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 104 3e-23
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 104 3e-23
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 104 3e-23
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 40 6e-04
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 40 6e-04
AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical ... 27 6.4
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 26 8.5
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 26 8.5
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 26 8.5
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 127 bits (306), Expect = 3e-30
Identities = 53/93 (56%), Positives = 70/93 (75%), Gaps = 1/93 (1%)
Frame = +2
Query: 116 MPAKAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSA 292
M +AV VL G+ V+GT++ QK E+ V+ GE+KGL+ G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 293 GAHFNPLKQEHGAPDSDTRHIGDLGNIEASSDG 391
G HFNP + HG P S+ RH+GDLGN+EA +DG
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADG 93
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 127 bits (306), Expect = 3e-30
Identities = 53/93 (56%), Positives = 70/93 (75%), Gaps = 1/93 (1%)
Frame = +2
Query: 116 MPAKAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSA 292
M +AV VL G+ V+GT++ QK E+ V+ GE+KGL+ G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 293 GAHFNPLKQEHGAPDSDTRHIGDLGNIEASSDG 391
G HFNP + HG P S+ RH+GDLGN+EA +DG
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADG 93
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 127 bits (306), Expect = 3e-30
Identities = 53/93 (56%), Positives = 70/93 (75%), Gaps = 1/93 (1%)
Frame = +2
Query: 116 MPAKAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSA 292
M +AV VL G+ V+GT++ QK E+ V+ GE+KGL+ G HGFHVH++GD+TNGC SA
Sbjct: 1 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 60
Query: 293 GAHFNPLKQEHGAPDSDTRHIGDLGNIEASSDG 391
G HFNP + HG P S+ RH+GDLGN+EA +DG
Sbjct: 61 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADG 93
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 127 bits (306), Expect = 3e-30
Identities = 53/93 (56%), Positives = 70/93 (75%), Gaps = 1/93 (1%)
Frame = +2
Query: 116 MPAKAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSA 292
M +AV VL G+ V+GT++ QK E+ V+ GE+KGL+ G HGFHVH++GD+TNGC SA
Sbjct: 23 MSNRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISA 82
Query: 293 GAHFNPLKQEHGAPDSDTRHIGDLGNIEASSDG 391
G HFNP + HG P S+ RH+GDLGN+EA +DG
Sbjct: 83 GPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADG 115
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 120 bits (289), Expect = 4e-28
Identities = 53/90 (58%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Frame = +2
Query: 125 KAVCVLHGD-VSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAH 301
+AV VL G V GTV+ QK E GE+KGLS G HGFH+H++GD+T+GCTSAG H
Sbjct: 24 RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAGPH 83
Query: 302 FNPLKQEHGAPDSDTRHIGDLGNIEASSDG 391
FNP K HG DS RH+GDLGN+EA +DG
Sbjct: 84 FNPCKMNHGGRDSVVRHVGDLGNVEAGADG 113
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 104 bits (249), Expect = 3e-23
Identities = 46/81 (56%), Positives = 57/81 (70%)
Frame = +2
Query: 149 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHG 328
++ GT+ FDQ S + ++G V GL+ GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQS--GSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 329 APDSDTRHIGDLGNIEASSDG 391
APD RHIGDLGNIE+ + G
Sbjct: 97 APDDSNRHIGDLGNIESPASG 117
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 104 bits (249), Expect = 3e-23
Identities = 46/81 (56%), Positives = 57/81 (70%)
Frame = +2
Query: 149 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHG 328
++ GT+ FDQ S + ++G V GL+ GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQS--GSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 329 APDSDTRHIGDLGNIEASSDG 391
APD RHIGDLGNIE+ + G
Sbjct: 97 APDDSNRHIGDLGNIESPASG 117
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 104 bits (249), Expect = 3e-23
Identities = 46/81 (56%), Positives = 57/81 (70%)
Frame = +2
Query: 149 DVSGTVFFDQKDESSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFNPLKQEHG 328
++ GT+ FDQ S + ++G V GL+ GKHGFH+HE GD NGC SAG H+NP K HG
Sbjct: 39 ELIGTIDFDQS--GSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHG 96
Query: 329 APDSDTRHIGDLGNIEASSDG 391
APD RHIGDLGNIE+ + G
Sbjct: 97 APDDSNRHIGDLGNIESPASG 117
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 39.9 bits (89), Expect = 6e-04
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +2
Query: 188 SSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFN 307
S+ + + GEV L G+H +H+FGD++ GC+ GA F+
Sbjct: 906 STALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 945
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 39.9 bits (89), Expect = 6e-04
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +2
Query: 188 SSPVVVSGEVKGLSKGKHGFHVHEFGDNTNGCTSAGAHFN 307
S+ + + GEV L G+H +H+FGD++ GC+ GA F+
Sbjct: 697 STALRIHGEVYTLPVGRHAVVLHQFGDSSEGCSRVGAPFS 736
>AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical
protein Y51A2A.7 protein.
Length = 260
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 197 VVVSGEVKG--LSKGKHGFHVHEFGDNTNGCTSAGA 298
V+ G ++G L+KG HG F NTN T+A A
Sbjct: 91 VINDGVLEGGVLNKGHHGTDYISFYGNTNRATAAAA 126
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
ZK945.9 protein.
Length = 3178
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 208 RNNYW*AFILLVEENCSTHISVKNAYSFS 122
RN+ F+LL E NC T AYS S
Sbjct: 1017 RNDSSQPFVLLKESNCLTEFGKNGAYSAS 1045
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 208 RNNYW*AFILLVEENCSTHISVKNAYSFS 122
RN+ F+LL E NC T AYS S
Sbjct: 1017 RNDSSQPFVLLKESNCLTEFGKNGAYSAS 1045
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform e protein.
Length = 2702
Score = 26.2 bits (55), Expect = 8.5
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 251 VHEFGDNTNGCTSAGAHF---NPLKQEHGAPDSDTRHIGDLGNIEASSD 388
VHEFG++ T P K+E G S+TR + +I A S+
Sbjct: 298 VHEFGESEASTTFGVGKLVTKKPEKEEVGRSFSETRKLSQFSDITAISE 346
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 26.2 bits (55), Expect = 8.5
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 251 VHEFGDNTNGCTSAGAHF---NPLKQEHGAPDSDTRHIGDLGNIEASSD 388
VHEFG++ T P K+E G S+TR + +I A S+
Sbjct: 5144 VHEFGESEASTTFGVGKLVTKKPEKEEVGRSFSETRKLSQFSDITAISE 5192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,686,983
Number of Sequences: 27780
Number of extensions: 167190
Number of successful extensions: 355
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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