Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D24
(542 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 29 0.59
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.59
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 26 4.1
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch... 25 5.5
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 7.2
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 25 7.2
SPAPB18E9.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 9.5
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 25 9.5
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 9.5
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 28.7 bits (61), Expect = 0.59
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +1
Query: 169 PQFFVNMDTLLKIYRTKMQDGILHDAKAITYGIVKEEEQYVYYANYSNTF 318
P F ++D L +YR+K +D HD K+ ++ EE+ Y+ ++ + + F
Sbjct: 116 PSQFSSID-LSWVYRSKEEDDDFHDPKSSVVSLMGEED-YLGWSRFCDLF 163
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.7 bits (61), Expect = 0.59
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 104 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 211
++ L+ A L + YQ S +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 279 FLFYN-SISNSLCIVKNTVLHFSAINLK*SVHINEE 175
FLF N S + SLC ++T F + S+HI E
Sbjct: 699 FLFSNGSCNTSLCYYESTDPDFGGLKTPMSIHIERE 734
>SPBC1773.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 412 WWSSERYGNLKHRRGEIYYNFYQQLNNT 495
+WS+ N K R E Y NF++ ++ T
Sbjct: 282 FWSNFEIANFKFFRNEQYENFFRTMDAT 309
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 76 NEGQFL-YAYYIAVIQRNDTHG 138
N G FL YA++ VI+ D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 7.2
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +1
Query: 139 FVLPAPYEVYPQFFVNMDTLLKIYRTKMQDGILHDAKAITYGIVKEEEQYVYYANYSNTF 318
FV+ + +P F NMD L K+ + GI DAK I +++ +Y+++A F
Sbjct: 689 FVVSSHIRSHPAFDPNMDVLKKV---PTETGI--DAKPIPQDLLR---KYIHFAR-EKVF 739
Query: 319 --LYNNEEQRLTYLTEDI 366
L +E++++ L D+
Sbjct: 740 PRLQQMDEEKISRLYSDM 757
>SPAPB18E9.03c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 44
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -3
Query: 333 FIIVKESVGIVGVIHILLFLFYNSISNSLCIVKNTVLH 220
F IVKE VG+ G+ I+ FL SIS + KN H
Sbjct: 2 FSIVKEEVGLPGM--IIYFLLQISISRCV-FSKNGFYH 36
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 273 FYNSISNSLCIVKNTVLH 220
FYN+I + L VKNT +H
Sbjct: 405 FYNNIKSYLSEVKNTEIH 422
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 325 NNEEQRLTYLTEDIGFNSYYYYFHSHL 405
+ + Q++ Y+ ++ NSY Y HSH+
Sbjct: 313 SRKTQKIHYINDNDPSNSYSSYQHSHV 339
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 24.6 bits (51), Expect = 9.5
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +3
Query: 258 LWNCKRGRAVCVLRQLFQH 314
+WN + G +C R+ +QH
Sbjct: 202 IWNSETGEKICEFRRGYQH 220
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +1
Query: 283 QYVYYANYSNTFLYNNEEQRLT--YLTEDIGFNSYYYYFHSHLPFWWSSERY 432
Q ++ SN + N L+ Y+T D GF S Y Y S + S E +
Sbjct: 265 QNTFFNGKSNPTIDPNSSSLLSEKYITLDKGFPSKYIYSRSLFEYQLSDEDF 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,570
Number of Sequences: 5004
Number of extensions: 46484
Number of successful extensions: 134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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