Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D24
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     28   4.2  
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375...    28   4.2  
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099...    28   5.5  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    27   7.3  

>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 19  YAKDFETFYKSAAFARVHLNEGQFLYAYYIAV 114
           Y KD   FY  +   +  + EG+FL ++Y+ +
Sbjct: 697 YVKDSRLFYSFSESTKELVQEGEFLQSFYVQI 728


>02_05_0008 +
           24934917-24935229,24936387-24936608,24936876-24937591,
           24937646-24937728,24938448-24938514,24938833-24939228,
           24939276-24939318,24939380-24939474,24940287-24940314,
           24940636-24940754
          Length = 693

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
 Frame = +1

Query: 334 EQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEI----YYNFYQQLNNTLL 501
           E+ + +    IG   Y  Y   + PF       GNLKH   ++    + ++ Q +    L
Sbjct: 281 EESIHFFMRSIGLREYSRYLCFNFPFTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPL 340

Query: 502 LRASLQTAW 528
           + A ++  W
Sbjct: 341 VDAGMRELW 349


>08_02_0021 +
           11307795-11308093,11308454-11308556,11309623-11309931,
           11310190-11310618
          Length = 379

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 211 RTKMQDGILHDAKAITYGIVKEEEQYVYYANYSNTFLYNNEE--QRLTYLTEDIGFN 375
           R   Q G + D   I YGI     +++Y+   S+  +  NE+     T  +ED+G N
Sbjct: 284 RIHRQKGHVEDHLYI-YGIASTYTRWIYHGEQSDAGINENEDHLDEHTSFSEDVGIN 339


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 44  TRVPLSL-VCT*MRDSSCTHIILQLSSAMILMDSFYQLLMK 163
           T+ P S  V T +  S+CTH   QLSSA +L     +  +K
Sbjct: 65  TQCPCSFAVATSISSSTCTHFTPQLSSAHLLSSQLKEKELK 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,997,012
Number of Sequences: 37544
Number of extensions: 267208
Number of successful extensions: 577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)