Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D24
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical pr...    28   3.8  
AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical...    28   5.0  
Z93380-1|CAB07598.2|  337|Caenorhabditis elegans Hypothetical pr...    27   6.6  

>Z54236-7|CAA90982.1| 1471|Caenorhabditis elegans Hypothetical
           protein C27B7.7 protein.
          Length = 1471

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/56 (23%), Positives = 29/56 (51%)
 Frame = +2

Query: 29  TLKPSTRVPLSLVCT*MRDSSCTHIILQLSSAMILMDSFYQLLMKFIHNSSLIWTL 196
           T  P T  PLS+ CT ++  S   ++ +++   + +DS +  ++  +H   +  T+
Sbjct: 256 TADPQTNEPLSITCT-VKSVSKASVLWKVNGIKVSVDSSFYTVVTSVHEDFIESTI 310


>AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical
           protein Y62E10A.16 protein.
          Length = 496

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 2   FSTCSTMLKTLKPSTRVPLSLV 67
           F TCS  +KT+K    +PLS+V
Sbjct: 294 FLTCSETIKTVKSDALIPLSIV 315


>Z93380-1|CAB07598.2|  337|Caenorhabditis elegans Hypothetical
           protein F28C12.1 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
 Frame = +1

Query: 313 TFLYNNEEQRLTYLTEDIGFNSYYY----YFHSHLPFWWSSERYGNLKHRRGEIYYNFYQ 480
           +F+Y++E  RL +   +     Y+Y    YF ++  F  + +R   + H + + Y++   
Sbjct: 90  SFVYSSEPCRLLFHFTECEVELYFYYLTNYFSTYAVFSLTFDRL--VSHYKPKYYFSHQY 147

Query: 481 QLNNTLL---LRASLQTAWV 531
            ++N+LL   L  SL T +V
Sbjct: 148 YVSNSLLIIQLLLSLSTYYV 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,391,326
Number of Sequences: 27780
Number of extensions: 252909
Number of successful extensions: 665
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)