Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D24
         (542 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00...    32   0.22 
At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00...    32   0.28 
At5g63410.1 68418.m07960 leucine-rich repeat transmembrane prote...    29   2.7  
At3g57300.1 68416.m06378 transcriptional activator, putative sim...    27   8.1  
At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger) fa...    27   8.1  

>At5g39460.1 68418.m04779 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 571

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 239 TMQRLLLMEL*KRKSSMCITPTIPTLSFTIMK 334
           T+QR+ L E+ K+    C++P +PT +FT  K
Sbjct: 522 TLQRINLGEILKKSLGSCVSPLLPTKNFTYTK 553


>At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00646
           F-box domain ; similar to SKP1 interacting partner 2
           (SKIP2) TIGR_Ath1:At5g67250
          Length = 568

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 200 LRFIALKCKTVFFTMQRLLLMEL*KRKSSMCITPTIPTLSFTIMK 334
           L F+  + K V  T+QRL L E+ K+    C+ P  P+ +FT M+
Sbjct: 507 LAFVWKETKVVI-TLQRLNLTEILKKGLGSCVPPLPPSKNFTYMR 550


>At5g63410.1 68418.m07960 leucine-rich repeat transmembrane protein
           kinase, putative contains similarity to receptor-like
           protein kinase
          Length = 680

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 295 YANYSNTFLYNNEEQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERY 432
           Y + SN FL+ +   +L+ + +   F   + +F+  LP W+ S  Y
Sbjct: 145 YLDLSNNFLFGSVPPKLSTMVKLETFRFDHNFFNGTLPSWFDSYWY 190


>At3g57300.1 68416.m06378 transcriptional activator, putative
           similar to transcriptional activator SRCAP [Homo
           sapiens] GI:5106572; contains Pfam profiles PF00271:
           Helicase conserved C-terminal domain, PF00176: SNF2
           family N-terminal domain
          Length = 1507

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 61  ARVHLNEGQFLYAYYIAVIQRNDTHGFV 144
           AR  L+EG  L  +Y+ ++++ DT+  V
Sbjct: 295 ARTILSEGGVLQVHYVKILEKGDTYEIV 322


>At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 248

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -2

Query: 352 GRSTSVLHYCKGKCWNSWRNTHTALPLLQF 263
           G+    LH     C  SW N H   P+ +F
Sbjct: 151 GKELKCLHLYHSSCIVSWLNIHNTCPICRF 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,553,819
Number of Sequences: 28952
Number of extensions: 228578
Number of successful extensions: 594
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)