Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D23
         (155 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    25   1.8  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    24   2.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    23   4.1  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    23   4.1  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    23   4.1  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    23   7.2  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    22   9.5  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    22   9.5  

>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 52  RKRQVSAQGVKKQYKSSY*KELPMRCLYF 138
           + + VS + V +  KS Y ++LP +CL F
Sbjct: 26  KNKVVSFEAVGQLKKSFYKRQLPKQCLAF 54


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 56  NARLVHRGLRNSIKVVIEK 112
           NA L+H+ LRN +   IEK
Sbjct: 621 NAELIHQRLRNGLPKSIEK 639


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 28   NRKTMESWRKRQVSAQGVK 84
            N KT ++W+ R  SA G+K
Sbjct: 1558 NYKTNKNWQDRTASATGLK 1576


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 63  LAFTPAFHCLPIVLFLWVLD 4
           L FT AF CL  V FL++LD
Sbjct: 78  LMFT-AFLCLTFVAFLYLLD 96


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 83  LTPCALTWRLRQLSIVFL 30
           L  C+ TW+L Q SIV +
Sbjct: 578 LKECSQTWKLAQRSIVLI 595


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -3

Query: 129 TSHRQFFSITTFILFLNPLCTN---LAFTPA 46
           T++R+FFS+ T I  L+ L ++   L F PA
Sbjct: 402 TNYRRFFSVGTVIQGLSRLFSSLYGLRFVPA 432


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 40 MESWRKRQVSAQGVKK 87
          ++ W K  V+AQG KK
Sbjct: 8  IDKWLKNAVAAQGFKK 23


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 95  LYCFLTPCALTWRLRQLSI 39
           +Y     CA TW+LR L +
Sbjct: 121 VYYIYRECAETWQLRHLRV 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,210
Number of Sequences: 5004
Number of extensions: 8634
Number of successful extensions: 29
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)