Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D23
         (155 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    26   4.2  
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    26   4.2  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    26   4.2  
U61946-3|AAC24395.2|  337|Caenorhabditis elegans Serpentine rece...    25   9.6  
U23176-7|AAC46713.4|  454|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = +2

Query: 44  KAGVNARLVHRGLRNSIKVVIEKN 115
           KAG++A + H GL ++++V ++++
Sbjct: 491 KAGLSAEVYHAGLNDNLRVSVQRS 514


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 93  ILFLNPLCTNLAFTPAFHCLPIVLF 19
           I++++PL +NL F PA+     ++F
Sbjct: 329 IIYISPLLSNLKFRPAYVLFLAIIF 353


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = +2

Query: 44  KAGVNARLVHRGLRNSIKVVIEKN 115
           KAG++A + H GL ++++V ++++
Sbjct: 491 KAGLSAEVYHAGLNDNLRVSVQRS 514


>U61946-3|AAC24395.2|  337|Caenorhabditis elegans Serpentine
           receptor, class h protein222 protein.
          Length = 337

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 114 FFSITTFIL--FLNPLCTNLAFTPAFHCLPI 28
           +   TTF+L   L+ +CT  AF P    LPI
Sbjct: 61  YLETTTFLLDLMLSVICTVNAFIPLMAVLPI 91


>U23176-7|AAC46713.4|  454|Caenorhabditis elegans Hypothetical
           protein F21H12.1 protein.
          Length = 454

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 93  ILFLNPLCTNLAFTPAFHCLPIVLFLWVLD 4
           +L  + +  N+A T + HCLP+    W  D
Sbjct: 49  VLIYDFMTRNIARTFSAHCLPVSCLSWSRD 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,362,964
Number of Sequences: 27780
Number of extensions: 47224
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)