Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D23
         (155 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   0.80 
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   0.80 
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   1.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   1.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   4.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   5.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   5.6  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          19   7.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   7.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    19   7.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    19   7.4  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 0.80
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 112 LFNNYFYTVS*PPVH*PGVYASFP 41
           L+ NY   +   PV  P  Y +FP
Sbjct: 116 LYKNYIINIEQIPVPVPVYYGNFP 139


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 0.80
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 112 LFNNYFYTVS*PPVH*PGVYASFP 41
           L+ NY   +   PV  P  Y +FP
Sbjct: 116 LYKNYIINIEQIPVPVPVYYGNFP 139


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -2

Query: 142 FKSINIS*AVLFNNYFYTVS*PPVH*PGVYASFP 41
           + + N +  + + NY   +   PV  P  Y +FP
Sbjct: 106 YNNNNYNKKLYYKNYIINIEQIPVPVPVYYGNFP 139


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 130 NIS*AVLFNNYFYTVS*PPVH*PGVYASFP 41
           N +  + + NY   +   PV  P  Y +FP
Sbjct: 335 NYNKKLYYKNYIINIEQIPVPVPVYYGNFP 364


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 72  CTNLAFTPAFHCLPIVLFL 16
           CT +  T  F CL +V  L
Sbjct: 222 CTQVYSTGNFTCLEVVFVL 240


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 49  SFPLSSYCLIFM 14
           S+ +S +CL+F+
Sbjct: 447 SYAVSGFCLLFL 458


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 49  SFPLSSYCLIFM 14
           S+ +S +CL+F+
Sbjct: 500 SYAVSGFCLLFL 511


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 25  DNRKTMESWRKRQVSAQGVKK 87
           +N K   SW + + SAQ   K
Sbjct: 39  NNIKRKRSWSRPRESAQTTSK 59


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 41  WKAGVNARLVHRGL 82
           W+  +NARLV   L
Sbjct: 908 WQVTLNARLVELSL 921


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = +1

Query: 25  DNRKTMESWRKRQVSAQGVKKQYKSSY*KELPMRCLYF*INF 150
           D R+   S   + +S+      Y ++Y      + LY+ IN+
Sbjct: 291 DRRERERSKEPKIISSLSNSCNYSNNYYNNNNYKKLYYNINY 332


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 74  RGLRNSIKVVIE 109
           R L NS+KV+ E
Sbjct: 23  RNLTNSLKVIYE 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,839
Number of Sequences: 438
Number of extensions: 516
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used:  2655300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)