Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D23
(155 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43130.1 68418.m05265 transcription initiation factor IID (TF... 27 2.2
At2g48110.1 68415.m06022 expressed protein 26 3.9
At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein, A... 25 5.2
At1g58320.1 68414.m06634 hypothetical protein similar to PGPS/D1... 25 6.8
At3g14740.2 68416.m01864 PHD finger family protein similar to zi... 25 9.0
At3g14740.1 68416.m01863 PHD finger family protein similar to zi... 25 9.0
At3g05550.1 68416.m00611 hypoxia-responsive family protein conta... 25 9.0
At2g37700.1 68415.m04623 CER1 protein, putative similar to CER1 ... 25 9.0
At1g60560.2 68414.m06818 SWIM zinc finger family protein contain... 25 9.0
At1g60560.1 68414.m06817 SWIM zinc finger family protein contain... 25 9.0
>At5g43130.1 68418.m05265 transcription initiation factor IID
(TFIID) component TAF4 family protein weak similarity to
SP|O00268 Transcription initiation factor TFIID 135 kDa
subunit {Homo sapiens}; contains Pfam profile PF05236:
Transcription initiation factor TFIID component TAF4
family
Length = 712
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 28 NRKTMESWRKRQVSAQGVKKQYKS 99
N+K E W K+Q A+ +KK +S
Sbjct: 546 NQKVKEEWEKKQAEAEKLKKPSES 569
>At2g48110.1 68415.m06022 expressed protein
Length = 1295
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 96 FILFLNPLCTNLAFTPAFHCLPIVLFLW 13
F++ + P +LA + C+PIV LW
Sbjct: 951 FLVLVGPALDSLAAACPWPCMPIVTSLW 978
>At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein,
Arabidopsis thaliana, AJ011845 contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 375
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 11 THKNKTIGRQWKAGV 55
TH NKT G WK GV
Sbjct: 111 THINKTFGHFWKNGV 125
>At1g58320.1 68414.m06634 hypothetical protein similar to PGPS/D12
[Petunia x hybrida] GI:4105794; contains Pfam profile
PF04749: Protein of unknown function, DUF614
Length = 148
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 95 LYCFLTPCALTWRLRQL 45
++CF PCALT R+L
Sbjct: 100 IHCFCCPCALTQEHREL 116
>At3g14740.2 68416.m01864 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 343
Score = 24.6 bits (51), Expect = 9.0
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -3
Query: 51 PAFHCLPIVLFLWVLD 4
P +HCLP +W +D
Sbjct: 62 PTYHCLPAKKRIWAID 77
>At3g14740.1 68416.m01863 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 341
Score = 24.6 bits (51), Expect = 9.0
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -3
Query: 51 PAFHCLPIVLFLWVLD 4
P +HCLP +W +D
Sbjct: 62 PTYHCLPAKKRIWAID 77
>At3g05550.1 68416.m00611 hypoxia-responsive family protein contains
Pfam profile: PF04588 hypoxia induced protein conserved
region
Length = 97
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +2
Query: 8 STHKNKTIGRQWKAGVNARLVHR----GLRNSIKVV 103
S HK +T+G W +G+ + + ++ S+K++
Sbjct: 16 SDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKII 51
>At2g37700.1 68415.m04623 CER1 protein, putative similar to CER1
GI:1199467 and maize gl1 homolog (glossy1 locus)
GI:1209703 from [Arabidopsis thaliana]; may be involved
in wax biosynthesis; contains a SUR2-type
hydroxylase/desaturase catalytic domain (PS50242)
Length = 493
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 123 HRQFFSITTFILFLNPLCTNLAFTPAFHCL 34
H F I F+ L P L +TP+FH L
Sbjct: 217 HCNFELIPKFLFSLLPPLKFLCYTPSFHSL 246
>At1g60560.2 68414.m06818 SWIM zinc finger family protein contains
Pfam domain PF04434: SWIM zinc finger
Length = 500
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 78 PLCTNLAFTPAFHCLPIVLFLWVL 7
PLCT L F H LP+ W++
Sbjct: 309 PLCTLLVFDSRHHALPVA---WII 329
>At1g60560.1 68414.m06817 SWIM zinc finger family protein contains
Pfam domain PF04434: SWIM zinc finger
Length = 703
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 78 PLCTNLAFTPAFHCLPIVLFLWVL 7
PLCT L F H LP+ W++
Sbjct: 309 PLCTLLVFDSRHHALPVA---WII 329
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,105,831
Number of Sequences: 28952
Number of extensions: 41417
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 12,070,560
effective HSP length: 32
effective length of database: 11,144,096
effective search space used: 211737824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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