Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D21
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0239 + 21637451-21638098,21638172-21638714                       29   1.3  
04_04_0423 - 25102305-25102489,25102571-25102717,25103079-251031...    28   2.3  
03_05_0233 - 22182565-22182897,22183025-22183193,22183287-221835...    27   5.3  
12_02_0525 + 20023013-20023063,20023129-20023221,20023726-200238...    26   7.1  
01_06_0530 + 30035854-30036765                                         26   7.1  
06_03_0923 - 25972063-25972840,25973549-25973620,25973711-259737...    26   9.3  
06_03_0143 + 17215975-17216745                                         26   9.3  

>11_06_0239 + 21637451-21638098,21638172-21638714
          Length = 396

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 155 SCHISLLLKLVPTIKSLHCTTHIKDRRTTNKTGATFI 45
           +CH  LLL     ++ + CT     RR     G T++
Sbjct: 129 TCHSQLLLAAAGAMRGVRCTAFFSMRRVVELAGGTWV 165


>04_04_0423 -
           25102305-25102489,25102571-25102717,25103079-25103150,
           25103305-25103327,25103792-25103863,25104064-25104112,
           25104344-25104415,25104880-25104951,25105281-25105352,
           25106569-25106640,25106810-25106881,25106974-25107048,
           25107324-25107470,25107598-25107805,25108361-25108489,
           25108563-25108769
          Length = 557

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -1

Query: 270 VCVVQIT---GNYTLYNLLPRIRKENFFNSFLQWD 175
           +CV ++    G Y+ ++LLPR   +  FN  ++W+
Sbjct: 62  LCVAKVREDIGKYSDFSLLPRDLSQQVFNELVEWN 96


>03_05_0233 -
           22182565-22182897,22183025-22183193,22183287-22183537,
           22183816-22183966,22184406-22184716
          Length = 404

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 97  VQCKDLIVGTSFNNRLIWQEKADYNAIPLKKRVKEVFFSD 216
           V C  L +G       IW  KA    + LKK  K +F+ +
Sbjct: 295 VICDHLSLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQE 334


>12_02_0525 +
           20023013-20023063,20023129-20023221,20023726-20023802,
           20025072-20025138,20025419-20025512,20027116-20027513
          Length = 259

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 341 PLSLCSFILT*ENPTPPAVMLAMASVWSRSRAITPFIICCPGSEKKTSLTL 189
           P ++ SFI   E    P +++    +   + A+T FI+   G  KKT+L +
Sbjct: 52  PQAISSFIFAKEYGLHPEIIITAVYITVGNHAVTSFIV---GYGKKTTLAI 99


>01_06_0530 + 30035854-30036765
          Length = 303

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 142 LIWQEKADYNAIPLKKRVKEVFFSD--PGQQIIKGVIARDLDHTDAI 276
           ++W +     A+ L+ RV EVF  D  P   I KGV+   LDH   +
Sbjct: 151 VLWAQDRRALALALQSRVAEVFAVDIHPAAAIGKGVL---LDHATGV 194


>06_03_0923 -
           25972063-25972840,25973549-25973620,25973711-25973747,
           25973852-25973910,25974011-25974295,25974653-25974954,
           25974986-25975116,25975209-25975296
          Length = 583

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 290 AVMLAMASVWSRSRAITPFIICC 222
           A +  +A+VW  S A+  F+ CC
Sbjct: 113 APVFVVAAVWFASLALAAFVACC 135


>06_03_0143 + 17215975-17216745
          Length = 256

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 302 PTPPAVMLAMASVWSRSRAITPFIICCP 219
           P+PP +   +AS  +   A+ P + CCP
Sbjct: 84  PSPPLLPAVLASCNAGGGALPPRLRCCP 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,400,284
Number of Sequences: 37544
Number of extensions: 181590
Number of successful extensions: 389
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)