Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D21
         (348 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8793| Best HMM Match : C1_1 (HMM E-Value=0.21)                      28   2.4  
SB_55877| Best HMM Match : RYDR_ITPR (HMM E-Value=1.8)                 27   4.2  
SB_55882| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_32297| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_30712| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.3  
SB_56707| Best HMM Match : DUF1361 (HMM E-Value=4.5)                   26   9.7  
SB_6496| Best HMM Match : Collagen (HMM E-Value=0)                     26   9.7  

>SB_8793| Best HMM Match : C1_1 (HMM E-Value=0.21)
          Length = 260

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 81  ILNVCRAM*RFNCRYKL**QTNMARKSRLQCHPIEEKS*RSFLFGSWAT 227
           +LNVCR    F   +      N AR  +L+ HP+   S  SFL   + T
Sbjct: 73  LLNVCRKFPFFLFHW----HPNKARFEQLENHPVHHPSHESFLIAQYLT 117


>SB_55877| Best HMM Match : RYDR_ITPR (HMM E-Value=1.8)
          Length = 515

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -1

Query: 315 NVGKSDTSCSYARDGVCVVQITGNYTLYNLLP 220
           N GK DTS   A   +  VQI GN    N LP
Sbjct: 431 NYGKDDTSVGMAASYLTSVQIQGNPRKNNELP 462


>SB_55882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 158 FSCHISLLLKLVPTIKSLHCTTHIKDRRTTNKT 60
           +S ++ L L+++P +KS HC +  K  R   ++
Sbjct: 162 YSRYLMLPLEIIPAVKSEHCRSATKRGRLIGRS 194


>SB_32297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 158 FSCHISLLLKLVPTIKSLHCTTHIKDRRTTNKT 60
           +S ++ L L+++P +KS HC +  K  R   ++
Sbjct: 62  YSRYLMLPLEIIPAVKSEHCRSATKRGRLIGRS 94


>SB_30712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +1

Query: 118 VGT-SFNNRLIWQEKADYNAIPLKKRVKEVFFSDPGQQIIKGVIARDLDHTDAIASITAG 294
           VGT SF    +W+ K     I LKK   ++  S+  Q   +  I + LDH + + +I   
Sbjct: 21  VGTGSFGTVTLWENKITKEQIVLKKCRLDLSPSNRNQWQKEVEIMKGLDHPNIVKAIDVP 80

Query: 295 GV 300
            V
Sbjct: 81  AV 82


>SB_56707| Best HMM Match : DUF1361 (HMM E-Value=4.5)
          Length = 142

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 158 FSCHISLLLKLVPTIKSLHCTTHIKD 81
           FSC +S++L LVP +  L+ T  + D
Sbjct: 40  FSCFVSVVLALVPLLFRLNNTKDVLD 65


>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1234

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 300 DTSCSYARDGVCVVQITGNYTL 235
           D +C  A DGVC++ + G Y +
Sbjct: 886 DGACMIAVDGVCMIGVDGAYMI 907


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,063,061
Number of Sequences: 59808
Number of extensions: 212098
Number of successful extensions: 539
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)