Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D20
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0249 - 1644280-1645161,1645328-1645432,1646322-1646805,164... 33 0.19
05_05_0051 + 21923402-21923763,21923861-21923951,21924048-219241... 30 1.0
01_06_0120 + 26622285-26622433,26623156-26623219,26623310-266233... 30 1.0
03_05_1137 + 30652967-30653183,30653281-30653485,30653696-306537... 29 1.8
03_02_0842 + 11682332-11683802,11683858-11683940,11684751-116865... 29 1.8
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 29 3.1
03_05_1136 + 30634685-30634919,30635008-30635303,30635398-306357... 29 3.1
07_01_0504 + 3756714-3757054,3757205-3757259,3757403-3757477,375... 28 5.4
12_02_0503 - 19756561-19757991,19758606-19759967 27 7.2
11_06_0233 + 21565233-21566053,21566840-21567890,21568075-215687... 27 9.5
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790... 27 9.5
>02_01_0249 -
1644280-1645161,1645328-1645432,1646322-1646805,
1647680-1647884,1648538-1648808
Length = 648
Score = 32.7 bits (71), Expect = 0.19
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -1
Query: 518 NLVRTG*SNTDAVRPVEDCSSESIYEHAPVNAFP*P-ASSFDEVVIVLGEVQYAENFNGL 342
+L G + D +R D ++E ++ AP F A FD V+V+GE YAE
Sbjct: 481 DLTAGGTTILDGIRRAVDAATEVVFAEAPDAGFMRRNAGRFDAAVVVVGEPPYAETLGDN 540
Query: 341 FHL 333
+L
Sbjct: 541 LNL 543
>05_05_0051 +
21923402-21923763,21923861-21923951,21924048-21924196,
21924279-21924522,21924664-21924768,21924842-21925024,
21925118-21925319,21925896-21926372,21926680-21926771,
21927265-21927444
Length = 694
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 488 DAVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAE 357
+A++ +E +YE P A F V+V+GEV YAE
Sbjct: 451 EAIKESVGAETEVVYEECPTEATV-ETGEFSYAVVVVGEVPYAE 493
>01_06_0120 +
26622285-26622433,26623156-26623219,26623310-26623399,
26623588-26623644,26623832-26623880,26624320-26624396,
26624918-26624957,26625037-26625131,26625525-26625689,
26625777-26625887,26625971-26626058,26626715-26626781,
26626955-26627063,26627155-26627272,26628345-26628590,
26628956-26629095,26629262-26629444,26629560-26629679,
26629932-26629967
Length = 667
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = -2
Query: 304 PRGSMPILKVSMNFVTTSDFEYLSVFS-SSIYSLATSLMSSYTVGCST*FKSFMMQI 137
P GSM I+ N S EY++V + +IY L +++ S + G S F+SF++ +
Sbjct: 516 PDGSMKIIDRKKNIFKLSQGEYVAVENLENIYGLVSAIDSIWVYGNS--FESFLVAV 570
>03_05_1137 +
30652967-30653183,30653281-30653485,30653696-30653786,
30653904-30654046,30654186-30654429,30654536-30654640,
30654985-30655167,30655255-30655459,30655552-30656036
Length = 625
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = -1
Query: 518 NLVRTG*SNTDAVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAENFNGLF 339
N + G + A++ D S+ +Y P ++ +D ++V+GE YAE F
Sbjct: 460 NNITAGTTILSAIKATVDPSTTVVYSENPDSSVV-TGDKYDYAIVVVGEPPYAEGFGDNL 518
Query: 338 HL 333
+L
Sbjct: 519 NL 520
>03_02_0842 +
11682332-11683802,11683858-11683940,11684751-11686553,
11687783-11688633,11689230-11689299,11689597-11689641
Length = 1440
Score = 29.5 bits (63), Expect = 1.8
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = +3
Query: 168 LQPTVYEDIKEVAREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVHTNALQMEQA 347
L PT+Y+D+KE Y +T+ K + + G+ H A+ ME
Sbjct: 297 LAPTMYDDVKEYLNWYGTRRDTNDKLKDPNAPVIGLVLQRSHIVTGD-DGHYVAVIMELE 355
Query: 348 VKVFRIL-YFAKDYDYFIKTACWLRERINGGMFVYALTA 461
K +++ FA D+ T +L + I G FV A+ +
Sbjct: 356 AKGAKVIPIFAGGLDFSGPTQRYLVDPITGKPFVNAVVS 394
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 159 NYVLQPTVYEDIKEVAREYMLEENTDKYSKSDV-VTKFMETFKMGMLPRGEVFVH 320
N VL+P I+ +ARE+M++ K DV + KF + M L + +H
Sbjct: 939 NIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSINKFFDEAMMNELAQQAADLH 993
>03_05_1136 +
30634685-30634919,30635008-30635303,30635398-30635790,
30635856-30636348,30636422-30636918
Length = 637
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 518 NLVRTG*SNTDAVRPVEDCSSESIY-EHAPVNAFP*PASSFDEVVIVLGEVQYAE 357
N V G + +A++ D S+ Y EH ++ A +D V+V+GE YAE
Sbjct: 468 NNVTAGTTILEAIKAAVDESTVIDYTEHPDKSSIAESAKEYDYAVVVVGEEPYAE 522
>07_01_0504 +
3756714-3757054,3757205-3757259,3757403-3757477,
3757638-3757729,3757914-3757995,3758138-3758221,
3758326-3758445
Length = 282
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 373 KYSMRKTLTACSICNAFV*TKTSPRGSMPILKV 275
K+ +TACS CN+ KT + +M +LKV
Sbjct: 209 KWEWENLVTACSRCNSRKGQKTVEQANMKLLKV 241
>12_02_0503 - 19756561-19757991,19758606-19759967
Length = 930
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 239 VLEIR-CCYEIHGDLQNGHATAW*GL-RSHKC 328
VL+I CC E+HG+ Q+G + W + R H C
Sbjct: 894 VLDINGCCNELHGECQSG-GSEWSKICRIHSC 924
>11_06_0233 +
21565233-21566053,21566840-21567890,21568075-21568758,
21568927-21569019,21571815-21571835
Length = 889
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 189 DIKEVAREYMLEENTDKYSKSDVVT 263
DIK+V ++ ++E N D+Y DV T
Sbjct: 232 DIKKVLKDILIEVNKDRYMVLDVST 256
>01_07_0016 - 40476014-40476333,40476598-40476740,40476945-40479099,
40479205-40480047,40480176-40480269,40480356-40481207,
40481367-40481437,40481750-40481821,40481977-40482019
Length = 1530
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 140 LHHETLELRTAANCVRGHQGSREGIYAGG 226
LHH+ L+ + AN +R H G E + G
Sbjct: 1001 LHHDQLQSQQLANALRQHAGREEERHLSG 1029
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,023,879
Number of Sequences: 37544
Number of extensions: 300055
Number of successful extensions: 747
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -