Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D20
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z66512-2|CAA91323.1|  387|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z74039-2|CAA98501.1|  448|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    28   4.8  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       28   4.8  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       28   4.8  
AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical p...    27   6.4  

>U50312-1|AAA92318.1|  285|Caenorhabditis elegans Hypothetical
           protein B0222.1 protein.
          Length = 285

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -2

Query: 301 RGSMPILKVSMNFVTTSDFEYLSVFSSSIYSLATSLMSSYTVGCST*FKSFMMQISFIFT 122
           RGS      S +F ++S     S FSSS  S  TS  SSY  G +T + S   Q  F  T
Sbjct: 29  RGSSGARSSSSSFSSSSSRSSGSSFSSSSSSRPTSGTSSYRSG-NTQYSSNFRQNVFHTT 87

Query: 121 SAFMRLSF-PIT 89
           S     S+ P+T
Sbjct: 88  STTTMFSYSPLT 99


>Z66512-2|CAA91323.1|  387|Caenorhabditis elegans Hypothetical
           protein F52H3.3 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 249 ISSTCPCFPPAYIPSRLP*CPRTQLA 172
           +S +CPC  P+ IP+RL   P TQ A
Sbjct: 26  LSISCPCDNPSNIPNRLFASPPTQSA 51


>Z74039-2|CAA98501.1|  448|Caenorhabditis elegans Hypothetical
           protein K03B8.2 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 18  LILVAFLAAATASVVNDANYSFDVVIGKDSLMKADVKMKEICIMKLLN 161
           L+L  FLA    S +      FD   GKD ++  D+ + E   +++LN
Sbjct: 27  LLLTLFLALVAGSAIRKDVDEFDSNKGKDGIVDGDIMLTE-AQLRILN 73


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 169 CSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWR 276
           C+ +C  T+  +R  +CW K   + RN   +   W+
Sbjct: 377 CTTMCEETNVLTRAEVCWDKFDMNYRN-QCMNGQWQ 411


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 169 CSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWR 276
           C+ +C  T+  +R  +CW K   + RN   +   W+
Sbjct: 377 CTTMCEETNVLTRAEVCWDKFDMNYRN-QCMNGQWQ 411


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 169 CSQLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWR 276
           C+ +C  T+  +R  +CW K   + RN   +   W+
Sbjct: 377 CTTMCEETNVLTRAEVCWDKFDMNYRN-QCMNGQWQ 411


>AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical
           protein Y20C6A.2 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = -2

Query: 355 TLTACS----ICNAFV*TKTSPRGSMPILKV--SMNFVTTSDFEYLSVF 227
           T TAC     +C  F   K++ + ++  L V  S NFV++ DFE L++F
Sbjct: 437 TQTACEFQNFVCQKFTDLKSAKKCTLNDLLVMESQNFVSSIDFEELNLF 485


>Z82285-5|CAB05298.2| 1679|Caenorhabditis elegans Hypothetical protein
            T28F3.5 protein.
          Length = 1679

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 120  DVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEENTDKYSKSDV 257
            DV +       L+ +V   + Y  +K VA    +  N+D Y  SD+
Sbjct: 925  DVSISNCIDQALIEFVNYSSEYSKLKFVANRIKIANNSDNYIVSDI 970


>Z81109-17|CAB03241.2|  497|Caenorhabditis elegans Hypothetical
           protein R10D12.10 protein.
          Length = 497

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = +1

Query: 274 RPSKWACYRVVRSSFTQMRCKWNRPLKFSAYCTSPRTMTTS 396
           RP     Y ++ +  T M  KW  P+ F      P   + S
Sbjct: 277 RPDYGKIYEILAAKMTSMGVKWTDPMDFDLQADKPNYFSKS 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,770,375
Number of Sequences: 27780
Number of extensions: 252092
Number of successful extensions: 676
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)