Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D20
(533 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C) 38 0.006
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi... 37 0.007
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 33 0.12
At5g55480.1 68418.m06910 glycerophosphoryl diester phosphodieste... 31 0.37
At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein bet... 30 0.84
At5g58050.1 68418.m07265 glycerophosphoryl diester phosphodieste... 29 1.5
At5g21222.1 68418.m02532 protein kinase family protein contains ... 28 3.4
At2g27110.2 68415.m03258 far-red impaired responsive protein, pu... 28 3.4
At2g27110.1 68415.m03257 far-red impaired responsive protein, pu... 28 3.4
At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containi... 28 4.5
At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase, puta... 28 4.5
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 28 4.5
At4g26690.1 68417.m03846 glycerophosphoryl diester phosphodieste... 27 5.9
At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase / lon... 27 7.9
At3g47000.1 68416.m05104 glycosyl hydrolase family 3 protein bet... 27 7.9
At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7)... 27 7.9
At1g77800.1 68414.m09059 PHD finger family protein contains Pfam... 27 7.9
At1g19570.1 68414.m02437 dehydroascorbate reductase, putative si... 27 7.9
At1g19550.1 68414.m02435 dehydroascorbate reductase, putative si... 27 7.9
>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
Length = 135
Score = 37.5 bits (83), Expect = 0.006
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 90 VIGKDSLMKADVKMKEICIMKLLNYV-LQPTVYE---DIKEVAREYMLEENTDKYSK-SD 254
VI KDS K K + C +KL+NY L PT Y D+KEVA L+ K + +
Sbjct: 53 VIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKE 112
Query: 255 VVTKFMETFKMG 290
K E FK G
Sbjct: 113 AKAKLEERFKTG 124
>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
tuberosum]
Length = 135
Score = 37.1 bits (82), Expect = 0.007
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Frame = +3
Query: 90 VIGKDSLMKADVKMKEICIMKLLNYV-LQPTVYE---DIKEVAREYMLEENTDKYSK-SD 254
VI KDS K K + C +KL+NY L PT Y D+KEVA L+ K + +
Sbjct: 53 VIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKE 112
Query: 255 VVTKFMETFKMG 290
K E FK G
Sbjct: 113 AKAKLEERFKTG 124
>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)
Length = 135
Score = 33.1 bits (72), Expect = 0.12
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Frame = +3
Query: 90 VIGKDSLMKADVKMKEICIMKLLNYV-LQPTVYE---DIKEVAREYMLEENTDKYSK-SD 254
VI KDS K K + C K++NY + PT Y D+K V + K + +
Sbjct: 53 VIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKE 112
Query: 255 VVTKFMETFKMG 290
KF E FK G
Sbjct: 113 AKAKFEERFKTG 124
>At5g55480.1 68418.m06910 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family;
similar to Glycerophosphoryl diester phosphodiesterase
precursor (Glycerophosphodiester phosphodiesterase)
(Surface-exposed lipoprotein D) (Protein D)
(ImmunoglobulinD-binding protein) (IGD-binding protein)
(SP:Q06282) {Haemophilus influenzae}
Length = 766
Score = 31.5 bits (68), Expect = 0.37
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Frame = +3
Query: 177 TVYEDIKEVAREYM--LEENTDKYSKSDVVTK--FMETFKMGMLPRGEVFVHTNALQMEQ 344
TVY+ ++E R+ + E+ K++ + V++K T + + ++ Q+
Sbjct: 562 TVYK-VEETIRDILDTAIEDIKKFADAVVISKKSVFPTSESFTTGQTKLVERLQKFQLPV 620
Query: 345 AVKVFRILYFAKDYDYFIKTACWLRER-----INGGMFVYALTAAVFHRSDCVRVTLTGP 509
V+VFR + ++ +D+F + ING + + LTAA + R+ C+ P
Sbjct: 621 YVEVFRNEFVSQPWDFFADATVEINSHVTGAGINGTITEFPLTAARYKRNSCLTRKDVPP 680
Query: 510 YEI 518
Y I
Sbjct: 681 YMI 683
>At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein
beta-glucosidase, common nasturtium, PIR:T10521
Length = 626
Score = 30.3 bits (65), Expect = 0.84
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 485 AVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAENF 351
AV+ D ++ IY P F A FD ++ +GE YAE F
Sbjct: 476 AVKKTVDPKTQVIYNQNPDTNFV-KAGDFDYAIVAVGEKPYAEGF 519
>At5g58050.1 68418.m07265 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family;
similar to Glycerophosphoryl diester phosphodiesterase
precursor (Glycerophosphodiester phosphodiesterase)
(Surface-exposed lipoprotein D) (Protein D)
(ImmunoglobulinD-binding protein) (IGD-binding protein)
(SP:Q06282) {Haemophilus influenzae}
Length = 753
Score = 29.5 bits (63), Expect = 1.5
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +3
Query: 348 VKVFRILYFAKDYDYF----IKTACWLRER-INGGMFVYALTAAVFHRSDCVRVTLTGPY 512
V V R Y A +DYF I+ A ++ R ++G + + TA + RS C + PY
Sbjct: 608 VSVLRNEYIAIAFDYFSDPTIELATFIAGRGVDGVITEFPATATRYLRSPCSDLNKDQPY 667
Query: 513 EIFP 524
I P
Sbjct: 668 AILP 671
>At5g21222.1 68418.m02532 protein kinase family protein contains
Pfam profile: PF00069 protein kinase domain
Length = 831
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +3
Query: 87 VVIGKDSLMK---ADVKMKEICIMKLLNYVLQPTVYEDIKEVAREYMLEE 227
+++ KD ++K A+ +EI IMKL+N+ +YE + A+ Y++ E
Sbjct: 42 MILDKDKVLKHKMAEQIKREISIMKLINHPNVVQLYEVLASKAKIYIVLE 91
>At2g27110.2 68415.m03258 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 306 EVFVHT-NALQMEQAVKVFRILYFAKDYDYFIKTACWLRERIN 431
E F HT N ++ + FR+ F D +I T C+ R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537
>At2g27110.1 68415.m03257 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282
Length = 851
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +3
Query: 306 EVFVHT-NALQMEQAVKVFRILYFAKDYDYFIKTACWLRERIN 431
E F HT N ++ + FR+ F D +I T C+ R N
Sbjct: 495 ETFAHTANRIEDDGTTSTFRVANFENDNKAYIVTFCYPEMRAN 537
>At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 620
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 252 DVVTKFMETFKMGMLPRGEVFVHT-NALQMEQAVKVFRILYFAKDYDYFIK 401
+ ++KFME KMG+ P F A V+ ++++++ + DY +K
Sbjct: 331 EAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLK 381
>At4g11030.1 68417.m01794 long-chain-fatty-acid--CoA ligase,
putative / long-chain acyl-CoA synthetase, putative
similar to acyl-CoA synthetase (MF7P) gi:1617270 from
Brassica napus
Length = 666
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 304 PRGSMPILKVSMNFVTTSDFEYLSVFS-SSIYSLATSLMSSYTVGCST*FKSFMMQIS 134
P GSM I+ N + EY++V + ++YS + S + G S F+SF++ I+
Sbjct: 508 PNGSMKIIDRKKNIFKLAQGEYVAVENLENVYSQVEVIESIWVYGNS--FESFLVAIA 563
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/52 (23%), Positives = 22/52 (42%)
Frame = +1
Query: 175 QLCTRTSRKSRGNICWRKTRTSTRNPMLLRNSWRPSKWACYRVVRSSFTQMR 330
Q+C+ R + G CW K R + P+ L P Y + + +++
Sbjct: 783 QVCSDLERDANGKACWSKKRKFDKIPLGLNTLVAPEDVCSYESMLAGLFRLK 834
>At4g26690.1 68417.m03846 glycerophosphoryl diester
phosphodiesterase family protein weak similarity to
glycerophosphodiester phosphodiesterase [Borrelia
hermsii] GI:1399038; contains Pfam profile PF03009:
Glycerophosphoryl diester phosphodiesterase family
Length = 759
Score = 27.5 bits (58), Expect = 5.9
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Frame = +3
Query: 213 YMLEENTDKYSKSDV--VTKFMETF---KMGMLPRGEVFVHTNA-----LQMEQA---VK 353
Y +EEN S + + KF + K+ + P + F+ T LQ Q V+
Sbjct: 557 YKVEENIRDILDSAIEDIKKFADAVVIQKLSVFPVAQSFITTQTNVVEKLQKSQLPVYVE 616
Query: 354 VFRILYFAKDYDYFIKTACWLRERI-----NGGMFVYALTAAVFHRSDCVRVTLTGPY 512
+F+ + ++ YD+F + I NG + + TAA + R+ C+ T PY
Sbjct: 617 LFQNEFLSQPYDFFADATVEINSYITGAGINGTITEFPFTAARYKRNLCLGRKETIPY 674
>At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase /
long-chain acyl-CoA synthetase nearly identical to
acyl-CoA synthetase (MF7P) from Brassica napus
[gi:1617270]
Length = 666
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 304 PRGSMPILKVSMNFVTTSDFEYLSVFS-SSIYSLATSLMSSYTVGCST*FKSFMMQIS 134
P GSM I+ N S EY++V + +IY ++ S + G S F+SF++ I+
Sbjct: 508 PDGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAVDSVWVYGNS--FESFLIAIA 563
>At3g47000.1 68416.m05104 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
TREMBL:AB017502_1
Length = 608
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 488 DAVRPVEDCSSESIYEHAPVNAFP*PASSFDEVVIVLGEVQYAE 357
DA++ +E IYE P + F ++ +GE YAE
Sbjct: 453 DAIKEAVGDETEVIYEKTPSKETLASSEGFSYAIVAVGEPPYAE 496
>At1g79340.1 68414.m09246 latex-abundant protein, putative (AMC7) /
caspase family protein similar to latex-abundant protein
[Hevea brasiliensis] gb:AAD13216; contains Pfam domain,
PF00656: ICE-like protease (caspase) p20 domain
Length = 418
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 191 HQGSREGIYAGGKHGQV 241
H GS+E +YAGG G V
Sbjct: 316 HVGSKEEVYAGGSRGSV 332
>At1g77800.1 68414.m09059 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1423
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +3
Query: 165 VLQPTVYEDIKEVAREYMLEENTDKYSKSDVVTKFMETFKMGMLPRGEVFVHTNALQMEQ 344
++ P+V ED ++ +++ + ++K V+T +FK LP+G +V + LQ ++
Sbjct: 1338 IVSPSVSEDGDNGSKPK--KQHVETFAKELVMTSDEASFKNRRLPKGYFYVPVDCLQEDK 1395
>At1g19570.1 68414.m02437 dehydroascorbate reductase, putative
similar to GB:BAA90672 from (Oryza sativa)
Length = 213
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 307 SPRGSMPILKVSMNFVTTSD 248
SP+G +P+LK+ +VT SD
Sbjct: 55 SPQGKVPVLKIDDKWVTDSD 74
>At1g19550.1 68414.m02435 dehydroascorbate reductase, putative
similar to dehydroascorbate reductase [Arabidopsis
thaliana] gi|10952514|gb|AAG24946
Length = 153
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 307 SPRGSMPILKVSMNFVTTSD 248
SP+G +P+LK+ +VT SD
Sbjct: 19 SPQGKVPVLKIDDKWVTDSD 38
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,066,643
Number of Sequences: 28952
Number of extensions: 232646
Number of successful extensions: 675
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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