Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D18
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    29   0.40 
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.1  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    26   3.7  
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    26   3.7  
SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit S18|...    25   6.5  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    25   6.5  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   6.5  
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    25   8.6  

>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +2

Query: 245 HVADNIPIKPMDYLNKANYTAVIERGHGAPELVVR 349
           HV++N  + P+ + N+AN + +   G  AP+++VR
Sbjct: 4   HVSNNSILDPVTFWNQANKSLIRYGGDFAPKIIVR 38


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 125 NDILAKLSPIREKLKQLSEAGVKDKPEWFTKVLGLSEKIYHVADNI 262
           N  LAKL+ +   LK   ++ +KD      +++  SEK   V D++
Sbjct: 16  NKCLAKLNELESILKDAKKSCLKDPTTSMKELVACSEKTQQVFDDL 61


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 290 KANYTAVIERGHGAPELVVRMCVTPNVALAKCRAMSVFAFSRDIRPIMDCVQEPTED 460
           K  YT ++ER     E  V      N   AK R   +  ++++ RP +  V+  T+D
Sbjct: 97  KVEYTHIVERYKNKLENGVDQIHHSNNEKAKIRFSKIEKYTKETRPTVSEVRVSTKD 153


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 215 KVLGLSEKIYHVADNIPIKPMDYLNKANYTA 307
           K+   SEK+  V   +  KP+  L K  Y A
Sbjct: 59  KIYPNSEKVVQVGQGLSFKPLSLLGKCGYIA 89


>SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 166

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 446 EPTEDDCFKSVQDN 487
           EP  +DCFK+V +N
Sbjct: 92  EPVREDCFKTVNEN 105


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
 Frame = -2

Query: 346 DDELRSAVSSFND---GSVVS---LVQVVHWFYWDVIGDVIYLLRQAQN 218
           ++E RSAV++  +   G  +S   +   V ++Y+DV   V YLL++A +
Sbjct: 31  EEEFRSAVATVRETLLGVPISEKEIADTVWYYYFDVEKSVNYLLQKASS 79


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -2

Query: 358 DAHSDDELRSAVSSFNDGSVVSLVQVVHWF--YWDVIG 251
           D  SDD + SA+++  DG +       H F  YW + G
Sbjct: 88  DVTSDDSINSALTTVTDGMLNYYQSTSHTFTAYWWMTG 125


>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 352 HSDDELRSAVSSFNDGSVVSLVQVV 278
           HS D  RS +    DGSVV L  V+
Sbjct: 365 HSQDNNRSNIELLKDGSVVRLRHVM 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,945
Number of Sequences: 5004
Number of extensions: 47506
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)