Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D18
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0228 + 1768318-1769871 36 0.033
12_01_0226 + 1715211-1716761 33 0.23
10_08_0174 - 15424277-15424618,15425125-15425633,15426004-154260... 30 1.6
01_07_0316 - 42696640-42697361,42697505-42697733 30 1.6
01_07_0315 - 42692539-42693260,42693357-42693609 30 1.6
01_07_0317 + 42699035-42699305,42699411-42700132 29 2.2
02_05_0665 - 30720842-30721003,30721290-30721448,30721555-307216... 29 3.8
03_02_0750 + 10909130-10909616,10912257-10912916,10913139-109135... 28 5.0
01_06_1044 + 34082801-34084339 28 5.0
09_04_0275 + 16302086-16303721,16304182-16304734,16305491-163055... 28 6.6
>11_01_0228 + 1768318-1769871
Length = 517
Score = 35.5 bits (78), Expect = 0.033
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 11/68 (16%)
Frame = -2
Query: 367 VWSDAHSDDELRSAVSSFNDGSVVSLVQVVHWFYW------DV---IGDVIYLLRQAQNL 215
V SD HSD+ LR V SF + + WF+W DV I D + +R+A
Sbjct: 291 VASDEHSDEVLRDIVLSFLIAGRETTASGLSWFFWFLSSRPDVVARIADEVRAVREATGT 350
Query: 214 R--EPFRF 197
R EPFRF
Sbjct: 351 RPGEPFRF 358
>12_01_0226 + 1715211-1716761
Length = 516
Score = 32.7 bits (71), Expect = 0.23
Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Frame = -2
Query: 367 VWSDAHSDDELRSAVSSFNDGSVVSLVQVVHWFYW------DV---IGDVIYLLRQAQNL 215
V SD HSD+ LR V SF + + WF+W DV I D + +R+A
Sbjct: 290 VASDEHSDEVLRDIVLSFLIAGRETTASGLSWFFWFLSSRPDVVARIADEVRAVREATGT 349
Query: 214 R--EPFRF 197
R EPF F
Sbjct: 350 RPGEPFGF 357
>10_08_0174 -
15424277-15424618,15425125-15425633,15426004-15426047,
15427097-15427100,15427646-15427672,15427885-15428371
Length = 470
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 140 KLSPIREKLKQLSEAGVKDKPEWFTKVLGLSEKIYH 247
K+SP E L + A +P W ++GL+ +YH
Sbjct: 216 KVSPDGEPLSVIKNAAFFQRPGWINNLVGLNGIVYH 251
>01_07_0316 - 42696640-42697361,42697505-42697733
Length = 316
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = +2
Query: 128 DILAKLSPIREKLKQLSEAGVKDKPEWFTKVLGLSEKIYHVADNI-----PIKPMDYLNK 292
DI+A + PI E+ ++ GV ++ +G K Y ++D++ DY+NK
Sbjct: 214 DIMANVVPITEQDSRIHNYGVTEEDSLAHLDIGF--KFYDLSDDVHGVLGQTYRSDYVNK 271
Query: 293 ANYTAVIERGHGAPELVVRMCVTPNVALAK 382
+ +A + GAP V + + A+A+
Sbjct: 272 LSVSASMPVMDGAPSYVASDIFSTDCAVAR 301
>01_07_0315 - 42692539-42693260,42693357-42693609
Length = 324
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Frame = +2
Query: 128 DILAKLSPIREKLKQLSEAGVKDKPEWFTKVLGLSEKIYHVADNI-----PIKPMDYLNK 292
DI+A + PI E+ ++ GV ++ LG K Y ++D++ DY+N
Sbjct: 222 DIMANVVPITEQDSRIHNYGVTEEDSLAHLDLGF--KFYDLSDDVHGVLGQTYRSDYVNN 279
Query: 293 ANYTAVIERGHGAPELVVRMCVTPNVALAK 382
+ +A + GAP VV + + A+A+
Sbjct: 280 LSVSASMPVMGGAPSYVVSDIFSTDCAVAR 309
>01_07_0317 + 42699035-42699305,42699411-42700132
Length = 330
Score = 29.5 bits (63), Expect = 2.2
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +2
Query: 128 DILAKLSPIREKLKQLSEAGVKDKPEWFTKVLGLSEKIYHVADNI-----PIKPMDYLNK 292
DI+A + PI E ++ GV ++ LG K Y ++D++ DY+NK
Sbjct: 228 DIMANVVPITEHDSRIHNYGVTEEDSLAHLDLGF--KFYDLSDDVHGVLGQTYRSDYVNK 285
Query: 293 ANYTAVIERGHGAPELVVRMCVTPNVALAK 382
+ +A + GAP V + + A+A+
Sbjct: 286 LSVSASMPVMGGAPSYVASDIFSADCAVAR 315
>02_05_0665 -
30720842-30721003,30721290-30721448,30721555-30721687,
30722042-30722227,30722377-30722906
Length = 389
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 352 HSDDELRSAVSSFNDGSVVSLVQVVHWFYWDVI 254
H D E +SS+ DG+ +S + H F+W I
Sbjct: 333 HEDAECCICLSSYEDGAELSALPCNHHFHWTCI 365
>03_02_0750 +
10909130-10909616,10912257-10912916,10913139-10913544,
10914376-10914757,10914918-10915679,10916106-10916165,
10916695-10917105
Length = 1055
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 140 KLSPIREKLKQLSEAGVKDKPEWFTKVLGLSEKIYH 247
K+SP E L + A +P W +GL+ +YH
Sbjct: 411 KVSPDGEPLSVIKNATFFQRPGWINNFVGLNGIVYH 446
>01_06_1044 + 34082801-34084339
Length = 512
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 352 HSDDELRSAVSSFNDGSVVSLVQVVHWFYW 263
HSD+ LR V++F S + WF+W
Sbjct: 295 HSDESLRDVVTNFLIAGRDSTSSALTWFFW 324
>09_04_0275 +
16302086-16303721,16304182-16304734,16305491-16305519,
16305639-16305897,16305969-16306110
Length = 872
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 47 VDGSKVPIREKACSWAARPWQGVIGHNDILAKLSP 151
VD + PI + A + A PW GH D + LSP
Sbjct: 584 VDNTGSPIVDAASNTTATPWSIGAGHVDPVKALSP 618
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,111,346
Number of Sequences: 37544
Number of extensions: 319178
Number of successful extensions: 773
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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