Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D18
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)           38   0.008
SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)            29   2.2  
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)                29   2.2  
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 29   2.9  
SB_16625| Best HMM Match : Death (HMM E-Value=1.5)                     28   5.1  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      28   6.7  

>SB_12466| Best HMM Match : Transferrin (HMM E-Value=4.4e-21)
          Length = 291

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
 Frame = +2

Query: 329 APELVVRMCVTPNVALAKCRAMSVFAFSRDIRPI----MDCVQEPTEDDCFKSVQDNGSD 496
           AP+L  R C   +  + KC+A++  A SR +       + CV+     DC   +Q + +D
Sbjct: 23  APKLG-RWCCISDAEVEKCQALAHVA-SRVVTSNETVNLTCVRGDGVTDCMSRIQRDEAD 80

Query: 497 LXXXXXXXXXXXXKKYNLHPVFHEVYGKK-KTPKYAV 604
           L             KY L PV  E YG K K   YAV
Sbjct: 81  LVTLGEEDIYIAGAKYGLRPVVAEDYGSKDKHIHYAV 117


>SB_51495| Best HMM Match : Acyl_transf_3 (HMM E-Value=0.45)
          Length = 936

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -2

Query: 328 AVSSFNDGSVVSLVQVV--HWFYWDVIGDVIYLLRQAQNLREPFR 200
           A++S N   V+S+  V+  H F W +IG +  +L     L  PFR
Sbjct: 346 AITSINGMRVLSMFWVILGHTFIWQLIGGLESMLSDVGALSMPFR 390


>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
          Length = 518

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 237 FSDKPRTFVNHSGLSFTPASDNCFSFSLIGDSLARISLCP 118
           +S+K   F   +G       +NC+ F L G  +A    CP
Sbjct: 450 YSNKDGMFCERNGDGIYAEKENCYGFVLCGGGIAHKKTCP 489


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 337  LRSAVSSFNDGSVVSLVQVVHWFYWD 260
            LR+A     + S+VS+V +VH F+W+
Sbjct: 3105 LRTAFLKEKEDSIVSIVSLVHSFFWE 3130


>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
          Length = 528

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 443 QEPTEDDCFKSVQDNGSDLXXXXXXXXXXXXKKYNLHPVFHEV 571
           Q+PT D  +K+++D   DL            +   L P +HE+
Sbjct: 216 QDPTSDKSYKALRDTTHDLLDGLRYSDQAKEEHAKLIPKYHEI 258


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 47  VDGSKVPIREKACSWAARPWQGVIGHNDILAKLSPIREKLKQLSEA-GVKDKPEWFTKVL 223
           VDG+ VP  +   S        +IG+  I  +   + E+   +SEA G   K E+ + +L
Sbjct: 251 VDGTSVPKSDSGVSLQLGTADNLIGYPGICCEDEKLEEEKDAMSEATGANTKEEFESDIL 310

Query: 224 GLSE 235
             SE
Sbjct: 311 PNSE 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,839,826
Number of Sequences: 59808
Number of extensions: 377621
Number of successful extensions: 945
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)