Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D18
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical...    28   5.9  
AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical...    28   5.9  

>Z81515-4|CAB04196.1|  739|Caenorhabditis elegans Hypothetical
           protein F26H11.4 protein.
          Length = 739

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/61 (37%), Positives = 28/61 (45%)
 Frame = +2

Query: 158 EKLKQLSEAGVKDKPEWFTKVLGLSEKIYHVADNIPIKPMDYLNKANYTAVIERGHGAPE 337
           EK K  SE   K K E   K LG   K+    +  P KP D+L K +     ERG   P+
Sbjct: 385 EKDKSASEEVKKKKEEPKLKSLGEESKL----ETKP-KPYDFLQKKSTKTTGERGRQKPQ 439

Query: 338 L 340
           L
Sbjct: 440 L 440


>AL110479-24|CAJ76966.1| 1084|Caenorhabditis elegans Hypothetical
            protein Y105C5B.21b protein.
          Length = 1084

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 154  NR**FGKDIVMSY-DSLPRSGSPGTRLLSDRNLRSVYAEVSELVR 23
            NR   GK  +  + D LP  GSP    +SD+ + +V   + E+VR
Sbjct: 879  NRELIGKYALRDFLDKLPEPGSPRRSAISDQTIGAVLGILFEIVR 923


>AL110479-23|CAB60320.2| 1254|Caenorhabditis elegans Hypothetical
            protein Y105C5B.21a protein.
          Length = 1254

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 154  NR**FGKDIVMSY-DSLPRSGSPGTRLLSDRNLRSVYAEVSELVR 23
            NR   GK  +  + D LP  GSP    +SD+ + +V   + E+VR
Sbjct: 1049 NRELIGKYALRDFLDKLPEPGSPRRSAISDQTIGAVLGILFEIVR 1093


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,677,690
Number of Sequences: 27780
Number of extensions: 269790
Number of successful extensions: 628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)