Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D18
(605 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g24680.1 68418.m02917 expressed protein similar to unknown pr... 30 1.4
At2g43500.1 68415.m05405 RWP-RK domain-containing protein low si... 29 3.2
At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine deacet... 28 4.2
At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine deacet... 28 4.2
At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine deacet... 28 4.2
At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine deacet... 28 4.2
At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine deacet... 28 4.2
At4g32100.1 68417.m04567 hypothetical protein 28 5.5
At5g10830.1 68418.m01258 embryo-abundant protein-related similar... 27 7.3
At3g13790.1 68416.m01742 beta-fructosidase (BFRUCT1) / beta-fruc... 27 7.3
At1g32600.1 68414.m04023 F-box family protein-related contains T... 27 7.3
At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containi... 27 9.6
At2g26230.1 68415.m03149 uricase / urate oxidase / nodulin 35, p... 27 9.6
>At5g24680.1 68418.m02917 expressed protein similar to unknown
protein (pir||T38384)
Length = 399
Score = 29.9 bits (64), Expect = 1.4
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = -2
Query: 475 TLETIILCRFLNAVHDRTDVPTECEN*HRTAFR*SNVWSDAHSDDELRSAVSSFNDGSVV 296
TL ++ +N+ + ++ + E H A + + SD HS D+ S+ S+ + +V
Sbjct: 11 TLPLSLIQSHVNSHFEDDEINPQIETDHHLALQ---LASDDHSSDDPSSSSSASSSNNVA 67
Query: 295 SLVQV--VHWFYWDVIGDVIYLLR 230
SLVQ+ FY G +I LLR
Sbjct: 68 SLVQLQTKSQFYSVGHGGLICLLR 91
>At2g43500.1 68415.m05405 RWP-RK domain-containing protein low
similarity to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 947
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 322 TRRSGARRQNVRHSKRCSSEMPCDVSFRIQ*GHPSDHGLRSRTD 453
T++ + N H++R +MP D SF++Q D+ ++ D
Sbjct: 693 TQKGLSSLDNDAHARRSQEDMPDDTSFKLQEAKSVDNAIKLEED 736
>At1g25210.1 68414.m03129 UDP-3-O-acyl N-acetylglycosamine
deacetylase family protein contains Pfam domain PF03331:
UDP-3-O-acyl N-acetylglycosamine deacetylase
Length = 955
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 143 LSPIRE-KLKQLSEAGVKDKPE-WFTKVLGLSEKI 241
LS +RE KL LS+ G+K K E W T +G ++ +
Sbjct: 135 LSVVREEKLSMLSQRGIKSKAEIWVTNKIGETQVV 169
>At1g25141.1 68414.m03121 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain;
Length = 925
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 143 LSPIRE-KLKQLSEAGVKDKPE-WFTKVLGLSEKI 241
LS +RE KL LS+ G+K K E W T +G ++ +
Sbjct: 135 LSVVREEKLSMLSQRGIKSKAEIWVTNKIGETQVV 169
>At1g25054.1 68414.m03117 UDP-3-O-acyl N-acetylglycosamine
deacetylase family protein contains Pfam domain PF03331:
UDP-3-O-acyl N-acetylglycosamine deacetylase
Length = 949
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 143 LSPIRE-KLKQLSEAGVKDKPE-WFTKVLGLSEKI 241
LS +RE KL LS+ G+K K E W T +G ++ +
Sbjct: 135 LSVVREEKLSMLSQRGIKSKAEIWVTNKIGETQVV 169
>At1g24880.1 68414.m03111 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
Length = 905
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 143 LSPIRE-KLKQLSEAGVKDKPE-WFTKVLGLSEKI 241
LS +RE KL LS+ G+K K E W T +G ++ +
Sbjct: 135 LSVVREEKLSMLSQRGIKSKAEIWVTNKIGETQVV 169
>At1g24793.1 68414.m03107 UDP-3-0-acyl N-acetylglucosamine
deacetylase family protein / F-box protein-related
contains weak hit to TIGRFAM TIGR01640 : F-box protein
interaction domain and weak hit to Pfam PF00646: F-box
domain; similar to ESTs dbj AV442495.1, gb|BE522756.1,
gb|T42945.1, gb|BE525268.1, gb|BE523201.1,
gb|BE526298.1, gb|T42945.1, gb|AA651584.1,
dbj|AV552951.1, dbj|AV547151.1, dbj|AV563142.1
Length = 925
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 143 LSPIRE-KLKQLSEAGVKDKPE-WFTKVLGLSEKI 241
LS +RE KL LS+ G+K K E W T +G ++ +
Sbjct: 135 LSVVREEKLSMLSQRGIKSKAEIWVTNKIGETQVV 169
>At4g32100.1 68417.m04567 hypothetical protein
Length = 123
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 98 RPWQGVIGHNDILAKLSPIREKLKQLSEAGVKDKPEWFTKVLGLS 232
RPW G ++ L LS I+ K + V++KPEW KVL S
Sbjct: 20 RPWYGDDSYS--LESLSVIQSKTGNM----VENKPEWEVKVLNSS 58
>At5g10830.1 68418.m01258 embryo-abundant protein-related similar to
embryo-abundant protein [Picea glauca] GI:1350531
Length = 261
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 349 SDDELRSAVSSFNDGSVVSLVQVVHWF 269
+DDEL + N ++++ Q VHWF
Sbjct: 87 TDDELVELIGGENSVDLITVAQGVHWF 113
>At3g13790.1 68416.m01742 beta-fructosidase (BFRUCT1) /
beta-fructofuranosidase / cell wall invertase identical
to beta-fructofuranosidase GI:402740 from [Arabidopsis
thaliana]
Length = 584
Score = 27.5 bits (58), Expect = 7.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 87 EHAFSLIGTFDPSTQRYLNSSGFSFDGLA 1
+H + IGT+D +++ +GF DG A
Sbjct: 285 KHDYYTIGTYDRVKDKFVPDNGFKMDGTA 313
>At1g32600.1 68414.m04023 F-box family protein-related contains
TIGRFAM TIGR01640 : F-box protein interaction domain;
identical to hypothetical protein GB:AAF25964 GI:6714268
from [Arabidopsis thaliana]
Length = 293
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 14 NENPDEFRYLCVDGSKVPIREKACSWAARPWQGVIGHND 130
N P LCV ++ +K W + PW V G++D
Sbjct: 195 NHYPSVDDNLCVCRREIRSGKKIARWDSDPWMNVAGNDD 233
>At2g39090.1 68415.m04803 tetratricopeptide repeat (TPR)-containing
protein low similarity to prediabetic NOD sera-reactive
autoantigen [Mus musculus] GI:6670773,
anaphase-promoting complex subunit 7 [Homo sapiens]
GI:6180015; contains Pfam profile PF00515: TPR Domain
Length = 558
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 128 DILAKLSPIREKLKQLSEAGVKDKPEWFTKVLGLSE 235
D+ A S REK K+ E+G++ +P + VL L+E
Sbjct: 422 DVHAFTSSGREKAKKFYESGLRLEPGYLGAVLALAE 457
>At2g26230.1 68415.m03149 uricase / urate oxidase / nodulin 35,
putative identical to uricase SP:O04420 from
[Arabidopsis thaliana]
Length = 309
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 571 NFVEYRMKVVLLCHCGNSYVID 506
+FVE+ + + LL HC +SY +D
Sbjct: 34 HFVEWNVSISLLSHCLSSYRLD 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,958,073
Number of Sequences: 28952
Number of extensions: 256340
Number of successful extensions: 687
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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