Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D17
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    27   2.1  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.8  
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    25   8.4  

>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 261 DRIFISSAKTTKIIHGKVHDGHTAKVLCFHVTSF 160
           D +F +    T ++H K   G T  V+C ++ +F
Sbjct: 114 DALFQTQPLLTLVVHCKAGKGRTGTVICSYLVAF 147


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 139  LRKKPRSHLHHYHQEGGRHRS 77
            LR   + H H YH++ G+++S
Sbjct: 1190 LRVPQKKHKHFYHRDDGKYKS 1210


>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 120 ATFTIIIRKAEGIGPKTFARIVDLTKMRTLSVLVGVN 10
           A   +I+   EGI      R+ D+ K ++ S LVG N
Sbjct: 120 AEVPLIVAITEGIPQHDMLRVSDILKTQSKSRLVGPN 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,927
Number of Sequences: 5004
Number of extensions: 39574
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)