Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D17
(500 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 3e-06
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 8e-06
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 40 0.001
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 39 0.003
SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.93
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41) 29 1.6
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035) 29 2.2
SB_74| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7) 29 2.8
SB_8405| Best HMM Match : PAN (HMM E-Value=0.044) 29 2.8
SB_4707| Best HMM Match : Toxin_17 (HMM E-Value=8.2) 28 3.8
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_56079| Best HMM Match : RnaseH (HMM E-Value=8.1) 27 8.7
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 48.4 bits (110), Expect = 3e-06
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +1
Query: 124 WVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDDFRGLCTGDKYPILRAAK 276
WV Y+D + K +Y+K K+L G + +DDF+G C YP++ A K
Sbjct: 324 WVGYDDVTSVQEKVNYIKKKSLLGAMFWAMDLDDFKGDCGQGSYPLMTAVK 374
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 47.2 bits (107), Expect = 8e-06
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 115 GGFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDDFRGLCTGDKYPILRAAKYRL 285
G W++Y+D + G K +K +NL G + +DDF +C +P++ A +Y L
Sbjct: 696 GSQWIAYDDVTSLGRKVELIKKENLLGAMFWAIDLDDFGNVCGQGAHPLMGAVRYML 752
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 112 EGGFWVSYEDPDTAGNKASYVKTKN-LGGVSIMDLSMDDFRG-LCTGDKYPILRAAK 276
+G W+ ++DP++ K V KN L GV + +DDF G C KYP++ A K
Sbjct: 315 KGKDWIGFDDPNSLVYKIDNVVKKNQLRGVMFWAIDLDDFSGEHCGQGKYPLMSAVK 371
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 115 GGFWVSYEDPDTAGNKASYV-KTKNLGGVSIMDLSMDDFRG-LCTGDKYPILRAAK 276
G WV Y+D + K V K K + G + +DDF+G C YP++ A K
Sbjct: 437 GDLWVGYDDEYSLSLKVERVIKAKGMAGAMFWAIPLDDFKGQFCGKGPYPLINAVK 492
>SB_37668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 30.3 bits (65), Expect = 0.93
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 82 YAFRLPDDNGEGGFWVSYEDPDTAGNKASYVKTKNLGGVSI 204
+ ++ PD + +G V+YEDP TA + K+ G SI
Sbjct: 208 WIYKHPDGSSKGECTVTYEDPPTASAAIEWFNGKDFMGQSI 248
>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
Length = 1017
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 168 TSFVSGRVRIFVRNPEATFTIIIRKAEGI 82
T + GR +IF+RNP F + ++ +G+
Sbjct: 640 TEYAYGRTKIFIRNPRTLFALEEKRKDGM 668
>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
Length = 2440
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 121 FWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMD 222
F VS+++PD N + VK+K+ ++DLS D
Sbjct: 1796 FEVSFDEPDVITNMKTKVKSKDTVRKDLLDLSSD 1829
>SB_74| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 711
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 103 DNGEGGFWVSYEDPDTAGNKASYV--KTKNLGG 195
DNG+G + VSYE P+ GN V + +N+GG
Sbjct: 382 DNGDGTYTVSYE-PNQRGNHKIIVTIRNRNIGG 413
>SB_29945| Best HMM Match : DUF125 (HMM E-Value=1.7)
Length = 608
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -2
Query: 244 QCKDH-ENHPWKGP*WTHRQGSLFSRN*LCFRPCQDLRKKPRSHLHHYHQEGGRHRSQNV 68
Q + H H W W H + ++R + + R PR H H++ G H +++
Sbjct: 255 QTRTHARRHAW----WEHEKAGTYTRRYIHRKDMAQTRTHPRRHAWREHKKAGTHTRRHM 310
>SB_8405| Best HMM Match : PAN (HMM E-Value=0.044)
Length = 387
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 109 GEGGFWVSYEDPDTAGNKASYVKT 180
G GG+W +D ++ GN+A KT
Sbjct: 320 GTGGYWYGQDDENSCGNEADTSKT 343
>SB_4707| Best HMM Match : Toxin_17 (HMM E-Value=8.2)
Length = 121
Score = 28.3 bits (60), Expect = 3.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 207 HDGHTAKVLCFHVTSFVSGRVRIFVRN 127
HDG + +CFH S +R+ V+N
Sbjct: 72 HDGIVPRTICFHKLSCCDDPIRVVVKN 98
>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2250
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = +1
Query: 115 GGFWVSYEDPDTAGNKASYVKTKNLGGVSIMDLSMDDFRGLCTGDKYPILRAAK 276
GG WV + GN+ + T + G V I S + G Y I+R K
Sbjct: 1217 GGSWVDVDQDAYCGNRTRFNVTSSCGWVRIRFKSDESITGRGFNATYRIIRDRK 1270
>SB_56079| Best HMM Match : RnaseH (HMM E-Value=8.1)
Length = 264
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 294 KSLKSVFCGPQDRIFISSAKTTKIIHGKVHDGH 196
KS KSV G + +IF + +I+H H H
Sbjct: 24 KSFKSVVAGNKVKIFSDNQNVVRIVHNGSHVPH 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,273,847
Number of Sequences: 59808
Number of extensions: 299055
Number of successful extensions: 748
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -