Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D16
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae Q0...    42   8e-05
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    29   0.61 
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   4.3  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    26   4.3  
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p...    26   4.3  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   7.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   9.9  

>SPMIT.10 |atp9||F0-ATPase subunit 9; similar to S. cerevisiae
           Q0130|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 74

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 22/54 (40%), Positives = 28/54 (51%)
 Frame = +1

Query: 235 AAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFSYAILGFALSE 396
           AAK+                    F +LI G +RNPS++  LFS AILGFAL+E
Sbjct: 4   AAKYIGAGLATIGVSGAGVGIGLIFSNLISGTSRNPSVRPHLFSMAILGFALTE 57


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 398 LWVSSVL*WRSFCCSLSKLSIILRTLQLPSYI 493
           LW  SVL W++  CS S L  IL  + +PS+I
Sbjct: 127 LW--SVLTWKNTSCSFSTLMSILALVYVPSWI 156


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +2

Query: 2   PPSRC----SLLSVVAPLKTQKCCMPQD*SPLQPGLLSSATQLLCDHS 133
           PPSR     S+LS   PLK          SPL+    SS T ++ DHS
Sbjct: 207 PPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTSSSKTFVIVDHS 254


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -2

Query: 423 HHKTEETHSLRQGETQDGI*EQLLFKGGVPGITNDEGTEYRSNTRSGSS 277
           H    ET      +T D +    L K G+P   ND   + ++N R  SS
Sbjct: 565 HPSATETKEETPKKTSDSLSLLTLLKSGLPTPANDLQNKSQNNERKASS 613


>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 57  VVCRKIDRPCSQDCYLQQHSSC 122
           VVC K DRP   +     HSSC
Sbjct: 82  VVCTKCDRPFLSEYIEDHHSSC 103


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 617 TRTVSVI*HIYTSVQALLEDEVSTHSI-PRPSTPDSN 510
           T+T  +I H  T + +LLE++++   I   P TP+S+
Sbjct: 31  TKTADIINHFIT-IHSLLEEKIAAVEILENPRTPNSS 66


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 147  CRHCCEWSHKSCVAEDS 97
            C +C EW H  CV   S
Sbjct: 1472 CHNCLEWFHYECVGLSS 1488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,159
Number of Sequences: 5004
Number of extensions: 52016
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)