Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D16
(670 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 2e-18
SB_39600| Best HMM Match : Sushi (HMM E-Value=0) 34 0.091
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_48395| Best HMM Match : MAM (HMM E-Value=0) 29 4.5
SB_44746| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9) 29 4.5
SB_27957| Best HMM Match : PHD (HMM E-Value=8.2e-15) 28 6.0
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 28 6.0
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_27464| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_59241| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30) 28 7.9
SB_45972| Best HMM Match : Ribosomal_L21e (HMM E-Value=9) 28 7.9
SB_8458| Best HMM Match : Ribosomal_L21e (HMM E-Value=9) 28 7.9
>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 89.8 bits (213), Expect = 2e-18
Identities = 50/96 (52%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Frame = +1
Query: 112 TALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXX 288
TA +RP + +VP +P + A R FQT+S +D+DSAAKF
Sbjct: 61 TAAIRPQSQALVKA-VVPASPLLGALASRGFQTSSAVQDVDSAAKFIGAGAATVGAAGSG 119
Query: 289 XXXXXXFGSLIIGYARNPSLKQQLFSYAILGFALSE 396
FGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 120 AGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 155
>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1368
Score = 34.3 bits (75), Expect = 0.091
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = -2
Query: 255 STNEFGSRVNVFGDRG-GLEGAHS**LSRCN--WNNLCV-CRHCCEWSHKSCVAEDSSPG 88
S + VN+ D G L G+HS + + N W+ C+ CE + S S G
Sbjct: 560 SVTTYRGVVNITCDTGFHLIGSHSR-VCQANGTWSGTTTTCKEKCE-RYPSMDVSQCSMG 617
Query: 87 CRGDQSCGIQHFCVLRGATTDNKEH 13
C DQ C H C G T N H
Sbjct: 618 CDVDQDCPPNHMCRCDGMQTTNNNH 642
>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 109 NTALVRPLAAVPTHTQIVPVAPA 177
NT LVRPL +P T P +PA
Sbjct: 1221 NTLLVRPLETIPAPTPTTPTSPA 1243
>SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 15 VLCCQSSHPSKHKNVVCRKIDRPCSQDCYLQQHSSCATTRSSAYTH 152
V+C +SS P+K + + + CS + + S + R S + H
Sbjct: 292 VICSESSTPTKDEKIAKSSVSSECSSSPHEAEESRKSKDRQSVFGH 337
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 112 TALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSVTKDIDSAA 240
T LVRPL +P T P +PA ++ +T K+ + A
Sbjct: 241 TLLVRPLETIPAPTPTTPTSPATPASGPPIRTPIPVKETSTTA 283
>SB_48395| Best HMM Match : MAM (HMM E-Value=0)
Length = 901
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = -2
Query: 168 NWNNLCVCRHCC-EWSHKSCVAEDSSPGCRGDQSCGIQ 58
NW C C ++ + C AED + C G GI+
Sbjct: 652 NWGAFGPCSETCYKYRQRFCTAEDKAANCPGADMFGIE 689
>SB_44746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 284 PERVLERYSVPSSLVMPGTPPLNNSCSHMPS 376
P+R + +PS + + TPPL +C + PS
Sbjct: 283 PQRSMSILPLPSEVRVDTTPPLRGACRYYPS 313
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 284 PERVLERYSVPSSLVMPGTPPLNNSCSHMPS 376
P+R + +PS + TPPL +C + PS
Sbjct: 221 PQRSMSILPLPSGARVDTTPPLREACRYYPS 251
>SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 461
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 112 TALVRPLAAVPTHTQIVPVAPAQLSAVRTFQTTSVTKDIDSAA 240
T LVRPL P P +PA ++V +T K+ S A
Sbjct: 19 TLLVRPLETTPAPAPTTPTSPATPASVAPIRTPIPLKETPSPA 61
>SB_27957| Best HMM Match : PHD (HMM E-Value=8.2e-15)
Length = 111
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 147 CRHCCEWSHKSCVAEDSSPGCRGDQSCGIQHFC 49
C C EW H C+ S G + ++S GI++ C
Sbjct: 62 CDRCDEWFHGDCIGITMSQGRQMEKS-GIEYNC 93
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 614 RTVSVI*HIYTSVQALLEDEVSTHSIPRPSTPDSNNTETS 495
R VS + +Y Q+ + S HSIP PS P N +S
Sbjct: 1680 RNVSQVLQVYAQCQSSIAKN-SVHSIPSPSRPSLNIAPSS 1718
>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 590 IYTSVQALLEDEVSTHSIPRPSTPDSN 510
+Y + +LLED S+ ++P P+ D+N
Sbjct: 530 VYITADSLLEDVQSSRTVPSPAKSDNN 556
>SB_27464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 106 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 225
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 58 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 98
>SB_10123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 106 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 225
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 640 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 680
>SB_59241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 106 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 225
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 48 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 88
>SB_55004| Best HMM Match : rve (HMM E-Value=8.7e-30)
Length = 682
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 106 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 225
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 639 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 679
>SB_45972| Best HMM Match : Ribosomal_L21e (HMM E-Value=9)
Length = 246
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 106 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 225
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 203 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 243
>SB_8458| Best HMM Match : Ribosomal_L21e (HMM E-Value=9)
Length = 195
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 106 SNTALVRPLAAVPTHTQIVPVAPAQLS-AVRTFQTTSVTKD 225
S T + P+AA P TQ VP+A + R QT S D
Sbjct: 152 STTPICEPVAATPDDTQSVPIATTESRYPTRVRQTPSHLND 192
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,873,554
Number of Sequences: 59808
Number of extensions: 448820
Number of successful extensions: 1600
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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