Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D15
(655 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12) 134 8e-32
SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 6e-09
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04) 32 0.35
SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06) 31 1.1
SB_15161| Best HMM Match : MAP1B_neuraxin (HMM E-Value=2.7) 31 1.1
SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_58552| Best HMM Match : UbiD (HMM E-Value=1.1) 28 7.6
SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 28 7.6
>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
Length = 120
Score = 134 bits (323), Expect = 8e-32
Identities = 57/117 (48%), Positives = 81/117 (69%), Gaps = 1/117 (0%)
Frame = +2
Query: 308 ECVPENLELKKKVFQNLDNVVDDN-TIXXXXXXXXXXXXXXENMKHKAQVIVSHPVNPPY 484
EC PENLELKKKVFQNL+ + + I E+++ + + IV+HP+NPPY
Sbjct: 1 ECTPENLELKKKVFQNLEATLSSSEVILASSTSCIMPSKFTESLQLRQRCIVAHPINPPY 60
Query: 485 YVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTLSREIDGFVLNRIQYAILGEVWR 655
YVPLVE++PAPWT V ++T +M++IGQ PV L +E +GF++NR+QYA++ E WR
Sbjct: 61 YVPLVEVIPAPWTDASVIEQTIKLMKDIGQSPVLLKKETNGFIVNRLQYALIAEAWR 117
>SB_21667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 812
Score = 58.0 bits (134), Expect = 6e-09
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 1/170 (0%)
Frame = +2
Query: 56 VGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNLNA 235
V ++G+GL+G A A G +V L+D Q + ++ +Q +K+ L R + A
Sbjct: 8 VAVIGAGLMGTCIAGELAYHGARVNLYDR-SAQAMEKSKEMLIQ----QKEQLKREEVMA 62
Query: 236 DEQFQCVKGTCD-LAIAVKDAIFVQECVPENLELKKKVFQNLDNVVDDNTIXXXXXXXXX 412
F C+ L AV ++ + E ENLE+KK VF+++ N +
Sbjct: 63 TSDFIGTVAFCESLEEAVVNSGLIFEATIENLEVKKSVFKSISQFCRTNAVIATNTLALD 122
Query: 413 XXXXXENMKHKAQVIVSHPVNPPYYVPLVEIVPAPWTKPEVTKKTRAIME 562
E++ + + + + P Y +P VEI T PE +K + +E
Sbjct: 123 TSVVAEHVTNPERCLGIRFLYPVYSIPEVEITLGSQTSPETIQKVQQFLE 172
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +2
Query: 212 LLRGNLNADEQFQ--CVKGTCDLAIAVKDAIFVQECVPENL 328
LLR + DE + C++ CD+A+ V D F+ +CV ++L
Sbjct: 806 LLRDTNDTDECMKECCLRDECDVAVMVSDYCFMADCVSDSL 846
>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
Length = 485
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 53 KVGIVGSGLIGRSWAMLFASVGYQVTLFD 139
+V IVG GL+G A+ FA GY+V L++
Sbjct: 165 EVAIVGGGLVGALSAVFFAKRGYKVDLYE 193
>SB_22397| Best HMM Match : DAO (HMM E-Value=7.6e-06)
Length = 456
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 29 MASKFKSEKVGIVGSGLIGRSWAMLFASVGYQVTL 133
++S F ++V ++G+G+IG + A + GY+VT+
Sbjct: 13 LSSPFGGQRVLVIGAGVIGLTTAYELLTAGYEVTV 47
>SB_15161| Best HMM Match : MAP1B_neuraxin (HMM E-Value=2.7)
Length = 210
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 141 TSNKVTWYPTEANNIAHDLPISPLPTIPTFSDLNL 37
TS K +WYP N D+P+S LP+I S + L
Sbjct: 55 TSEKNSWYPNPEN----DIPLSTLPSIQPLSKVKL 85
>SB_57609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 53 KVGIVGSGLIGRSWAMLFASVGYQVTLFDVVE 148
KVGIVGSG+ G S A L G +V L++ E
Sbjct: 2 KVGIVGSGIAGLSAAWLLTLRGNEVHLYEKQE 33
>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2509
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 515 PWTKPEVTKKTRAIMEEIGQEPVTLSREID 604
PW + R + + IG++P TL REID
Sbjct: 1831 PWLSSAEERLARKMAQPIGRDPSTLRREID 1860
>SB_9370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 44 KSEKVGIVGSGLIGRSWAMLFASVGYQVTLFDVVEK 151
KS KV IVGSG+ G A S G VT+ + E+
Sbjct: 249 KSPKVIIVGSGIAGLMAARQLQSFGIDVTMVEARER 284
>SB_58552| Best HMM Match : UbiD (HMM E-Value=1.1)
Length = 409
Score = 27.9 bits (59), Expect = 7.6
Identities = 26/106 (24%), Positives = 51/106 (48%)
Frame = +2
Query: 56 VGIVGSGLIGRSWAMLFASVGYQVTLFDVVEKQITDAIADIKVQLKTLEKDGLLRGNLNA 235
VG+VG+G++ R A + L + + I++ ++ K L+ DG + +
Sbjct: 288 VGVVGAGVVSRGLTGKVAKHEDTMVLAESKKNSISELVS------KALQ-DGRI-----S 335
Query: 236 DEQFQCVKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLDNVVD 373
DE+F+ + + +KDAI + + + +L V +L N+VD
Sbjct: 336 DEEFRLILQEQERYNTLKDAIRARHGLAPHYDLPNIVDYDLPNIVD 381
>SB_17988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 254 VKGTCDLAIAVKDAIFVQECVPENLELKKKVFQNLD 361
+K + D+ +V DA V E + ENL K K+F LD
Sbjct: 13 LKISLDVPGSVADADLVIEAIVENLRTKHKLFTALD 48
>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 352
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Frame = +2
Query: 428 ENMKHKAQVIVSHPVNP------PYYVPLVEIVPAPWTKPEVTKKTRAIMEEIGQEPVTL 589
E+ K K V+ P P P Y+P+ P P P+ K ++++++I Q +TL
Sbjct: 101 EDAKRKFLVLAPFPRMPLISPPLPMYIPVPVPQPVPQPVPQPASKGKSVLDKILQLQMTL 160
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,408,389
Number of Sequences: 59808
Number of extensions: 422861
Number of successful extensions: 2670
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2668
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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