Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D14
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      56   2e-08
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      56   2e-08
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      52   5e-07
SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)                     32   0.47 
SB_18241| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)                   29   3.3  
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      28   5.7  
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       28   5.7  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 34/159 (21%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
 Frame = +2

Query: 158 NVVSSPLGVMMLMLLYKAGAGEGSRAEIDK-FLGNGDYSGVANPYISLSKTFSEMNPDYF 334
           N+  SP  +++ + +   GA   +  ++ K F    D     + ++      S  + +  
Sbjct: 29  NLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDFLQALNA-SNSDGNQI 87

Query: 335 TMANKIYVGNKYTLDEKFTITVRQ-YQSEVETIDF-SDTKKAADIINQWANEKTRGHIKS 508
            MAN+++    + + E+F    ++ + +E+  +D+  ++  A D +N+W  +KT+  IK+
Sbjct: 88  LMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKN 147

Query: 509 PISDDTIDPNAAAALFNVIFFQGHWHVPFNASETKEKDF 625
            I +   + +    L N ++F+G W   FN + T+   F
Sbjct: 148 LIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKF 186


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
 Frame = +2

Query: 335 TMANKIYVGNKYTLDEKFT-ITVRQYQSEVETIDF-SDTKKAADIINQWANEKTRGHIKS 508
           ++AN +++   +++ ++FT I  + Y +++  +D+ +D + A   +NQW  E+T+  I  
Sbjct: 51  SIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKICD 110

Query: 509 PISDDTIDPNAAAALFNVIFFQGHWHVPFNASETKEKDFHVDSTTIVK 652
            I+    +      L N I+F+G W  PF    +   +F   S+  V+
Sbjct: 111 LIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVE 158


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
 Frame = +2

Query: 311 SEMNPDYFTMANKIYVGNKYTLDEKFTITVRQ-YQSEVETIDFSDTK-KAADIINQWANE 484
           S++      + NKI+  +++ + E+F    R+ Y SE+  +DF +    A   +N W ++
Sbjct: 48  SDLGYGEIQLVNKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQ 107

Query: 485 KTRGHIKSPISDDTIDPNAAAALFNVIFFQGHWHVPFNASETKEKDFHV 631
           +T+G+IK  I    I+      + N ++F+G W   F    T    F V
Sbjct: 108 QTKGNIKELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFV 156


>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
          Length = 1047

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 320 NPDYFTMANKIYVGNKYTLDEKFTITVRQYQSEV-ETIDFSDTKKAADIINQWANEKTRG 496
           +PD         + +K T D +    + + +SEV E  DFS  K   D + +  +EK R 
Sbjct: 102 DPDVMERILTERIHDKLTSDSELEPLLNELKSEVAEDYDFSVRKAIVDYVLKDPSEKNRL 161

Query: 497 HIKS 508
           HIKS
Sbjct: 162 HIKS 165


>SB_18241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 547 GSCIRIYGVIRDWRF-NMSSGLLISPLINDVS 455
           GSC+   GV R W+F +++ G L+S L N V+
Sbjct: 3   GSCLWKLGVFRAWKFGSVNDGFLLSGLSNQVA 34


>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
          Length = 336

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -2

Query: 261 PLPKNLSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSL 127
           PLP + + +   PS +PA Y S + +T  G  +TF   D+ ++SL
Sbjct: 235 PLPTSATPTGTTPSVSPATYSSPTPVTIQG--STFTFDDNAFLSL 277


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 263 DYSGVANPYISLSKTFSEMNPDYFTMA-NKIYVGNKY-TLDEKFTITVRQY 409
           +YS ++  Y++LSK +S ++ +Y T++ N   +   Y TL + +    + Y
Sbjct: 19  NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69


>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 263 DYSGVANPYISLSKTFSEMNPDYFTMA-NKIYVGNKY-TLDEKFTITVRQY 409
           +YS ++  Y++LSK +S ++ +Y T++ N   +   Y TL + +    + Y
Sbjct: 19  NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,272,845
Number of Sequences: 59808
Number of extensions: 419984
Number of successful extensions: 1146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)