Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D13
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    28   0.88 
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    26   4.7  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    26   4.7  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    26   4.7  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    26   4.7  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   6.2  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    25   8.2  

>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 28.3 bits (60), Expect = 0.88
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 256 IVDEYQIEIFTKYFI*RNHWLFSFI 330
           I D+Y  EIF ++F+ R  WLF  I
Sbjct: 314 ISDDYFPEIFKRHFLNRKRWLFPSI 338


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 280 IFTKYFI*RNHWLFSFIIY*GINYNIRH*FTVKIW 384
           I + + I   ++   F ++  INY  RH FTV  W
Sbjct: 277 ILSLFLISFGYFFTFFAVFSVINYGFRHKFTVAWW 311


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 280 IFTKYFI*RNHWLFSFIIY*GINYNIRH*FTVKIW 384
           I + + I   ++   F ++  INY  RH FTV  W
Sbjct: 277 ILSLFLISFGYFFTFFAVFSVINYGFRHKFTVAWW 311


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 280 IFTKYFI*RNHWLFSFIIY*GINYNIRH*FTVKIW 384
           I + + I   ++   F ++  INY  RH FTV  W
Sbjct: 277 ILSLFLISFGYFFTFFAVFSVINYGFRHKFTVAWW 311


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 280 IFTKYFI*RNHWLFSFIIY*GINYNIRH*FTVKIW 384
           I + + I   ++   F ++  INY  RH FTV  W
Sbjct: 277 ILSLFLISFGYFFTFFAVFSVINYGFRHKFTVAWW 311


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -2

Query: 232 NYERA*IYYVKSLSPQTVWGR 170
           NYE+  +Y++++L  +TVW R
Sbjct: 652 NYEKG-VYWIRNLLAKTVWDR 671


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 92  FRIVPSLRPRDPPSRIPSLPFR 27
           FR   + RPR+PP ++ +L  R
Sbjct: 146 FRYTANYRPREPPMKVTNLESR 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,390
Number of Sequences: 5004
Number of extensions: 52294
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)