Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D13
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713... 30 1.2
02_04_0557 + 23865202-23865437,23865469-23865997 30 1.6
04_04_0784 - 28044883-28045654,28046626-28046859,28047328-28047875 29 2.1
01_05_0593 + 23494515-23494706,23495819-23495936,23496302-234963... 29 2.7
12_02_1114 - 26171876-26172493 28 4.8
09_04_0457 - 17736158-17737336 28 4.8
07_01_1046 - 9138000-9138293,9139550-9139714,9139862-9140010,914... 28 6.3
11_05_0106 - 19107137-19107177,19107314-19107759,19107913-19108121 27 8.4
11_01_0148 + 1242454-1242634,1242774-1243648 27 8.4
02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504 27 8.4
>09_02_0308 +
7137099-7137132,7137495-7137611,7138252-7138319,
7138413-7138538,7138650-7139619,7139641-7139737,
7140026-7140113,7140336-7140396,7140425-7140447,
7140663-7140776,7141193-7141306,7144731-7144825,
7146506-7146824,7147166-7147309,7147463-7147564,
7147868-7147971,7148121-7148247,7148804-7148845,
7148939-7149091,7149326-7149426,7149807-7150227
Length = 1139
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 237 RLIMNVREYITLSPFHPKLSGDGVIRNTSNVGLEDLTRSGHGVL 106
R+I + + + ++ FHP G G++ T G + RSG GVL
Sbjct: 577 RVIPSAEDEVNVACFHPS-PGAGLVYGTKGGGSMECVRSGSGVL 619
>02_04_0557 + 23865202-23865437,23865469-23865997
Length = 254
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +1
Query: 25 GRNGREGMRDGGSRGRN 75
GR GR G R GG RGRN
Sbjct: 126 GRRGRRGRRRGGGRGRN 142
>04_04_0784 - 28044883-28045654,28046626-28046859,28047328-28047875
Length = 517
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = -3
Query: 402 TRLVYKPNFHCKLMAYVIINTLIDNKTKQPVISLYEIFCEYFYLIFVYYNHNPRPRLIMN 223
T + YK F ++ + ID P+IS + +F + F + + NH +P ++N
Sbjct: 439 TTIGYKRLFQFPVVEGQFLKLSIDGARADPLISFFGVFTDSFSVTYSLENHE-KPS-VVN 496
Query: 222 VREYITLSPFH 190
E I L H
Sbjct: 497 SSEVIMLRTDH 507
>01_05_0593 +
23494515-23494706,23495819-23495936,23496302-23496384,
23496468-23496524,23497004-23497112,23497230-23497282,
23497644-23497724,23497815-23497931
Length = 269
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 462 VKKIYKIFELFVRDSNNIMVTRLVYKPNFHCKLMAYVIINTLID 331
V ++ +++LF + SN+I+ L++K FH L N +D
Sbjct: 106 VNEVEALYDLFRKLSNSIIKDGLIHKEEFHLALFRNKKTNLFVD 149
>12_02_1114 - 26171876-26172493
Length = 205
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 19 RAGRNGREGMRDGGSRGRNEGTI 87
RA R G G DGG+RGR G +
Sbjct: 145 RAARGGGGGGGDGGARGRGRGRV 167
>09_04_0457 - 17736158-17737336
Length = 392
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 19 RAGRNG--REGMRDGGSRGRNEGTIR 90
RAGR G R G+R GG G EG+ R
Sbjct: 310 RAGRQGSTRRGLRSGGGGGGGEGSSR 335
>07_01_1046 -
9138000-9138293,9139550-9139714,9139862-9140010,
9140363-9140510,9140659-9140727,9140827-9141087,
9141498-9141692,9142932-9143048,9143701-9144477
Length = 724
Score = 27.9 bits (59), Expect = 6.3
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -2
Query: 208 YVKSLSPQTVWGRSDPEHVQRWA*GPYEV-RTRSIGPCHTFESFPHC-GHVTRHHASLP 38
+ + +SP+ V R H+ R+ P V R +GP H +E FP G V H+SLP
Sbjct: 667 WARYVSPEMVNMRG---HLMRY---PINVERDGRVGPVHGYECFPDVGGKVLGTHSSLP 719
>11_05_0106 - 19107137-19107177,19107314-19107759,19107913-19108121
Length = 231
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 62 HVAAMRERFESMTRANTPCPDLVRSSSP 145
+++A F + R+N CPD VR +SP
Sbjct: 53 YISAEHTFFRDLLRSNKKCPDGVRVASP 80
>11_01_0148 + 1242454-1242634,1242774-1243648
Length = 351
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 252 HNPRPRLIMNVREYITLSPFHPKLSGDGVIRN 157
HN P L +N E++ FH K GD I N
Sbjct: 152 HNHYPNLRLNPNEWVVCKVFHKK-QGDEAINN 182
>02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504
Length = 681
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 159 NTSNVGLEDLTRSGHGVLARVILSNRSLIA 70
N + G E L GHG + + ILS++S++A
Sbjct: 338 NNTEYGREILITQGHGTVYKGILSDQSVVA 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,041,018
Number of Sequences: 37544
Number of extensions: 310598
Number of successful extensions: 850
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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