Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D13
(587 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023) 40 0.002
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 31 0.92
SB_16898| Best HMM Match : IncA (HMM E-Value=0.36) 29 2.1
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_15681| Best HMM Match : Na_Ca_ex (HMM E-Value=1.9e-36) 29 3.7
SB_29063| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_11734| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_3605| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_52753| Best HMM Match : zf-CCHC (HMM E-Value=7.6e-06) 28 6.5
SB_59295| Best HMM Match : SET (HMM E-Value=0) 27 8.6
>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
Length = 1016
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Frame = -3
Query: 234 LIMNVREYITLSPFHPKLSGDG---VIRNTSNVGLEDLTRSGHGVLARVILSNR-SLIAA 67
LI V++Y+ +P P+ G +++ + V L+ LT++ G+L + L R +AA
Sbjct: 821 LIQVVKDYLMYAPSEPQSPGQPSPPLLKRCAAV-LDPLTKAIPGLLEGLYLMGRVKYLAA 879
Query: 66 T*PAITHPFPSVSTGS 19
T P+++HPFP V++ S
Sbjct: 880 TGPSLSHPFPLVTSNS 895
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 184 TVWGRSDPEHVQRWA*GPYEVRTRSIGP 101
TVW RS EH+ +W PYE T+ P
Sbjct: 860 TVWTRSPYEHITKWTRPPYEHITKWTRP 887
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 184 TVWGRSDPEHVQRWA*GPYEVRTRSIGP 101
TVW R EH+ +W PYE T+ P
Sbjct: 127 TVWTRPPYEHITKWTRPPYEHITKWTRP 154
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 184 TVWGRSDPEHVQRWA*GPYEVRTRSIGP 101
TVW R EH+ +W PYE T+ P
Sbjct: 204 TVWTRPPYEHITKWTRPPYEHITKWTRP 231
>SB_16898| Best HMM Match : IncA (HMM E-Value=0.36)
Length = 466
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 53 MAGHVAAMRERFESMTRANTPCPDLVRSSSPTLDVFRITPSPDSLG 190
M G +A+ R +M N+ P++ R SP+ D FR+ + D LG
Sbjct: 223 MVGAIASFIFRTAAMEEYNSIYPNVPRGVSPSGDNFRLQKTHDVLG 268
>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 184 TVWGRSDPEHVQRWA*GPYEVRTRSIGP 101
TVW R EH+ +W PYE T+ P
Sbjct: 148 TVWTRPPYEHITKWTRPPYEHITKWTRP 175
>SB_15681| Best HMM Match : Na_Ca_ex (HMM E-Value=1.9e-36)
Length = 183
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 306 SLYEIFCEYFYLIFVYYNHNPRPRL 232
SL + C + Y+IF+ YNHN R+
Sbjct: 127 SLVLLLCYFAYVIFMKYNHNVERRI 151
>SB_29063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 13 SERAGRNGREGMRDGGSRGRNEGTIRKYDTGQ 108
S R GR GR G G RGR G R +GQ
Sbjct: 35 SGRGGRGGRGGSGRGRGRGRGSGRGRGRGSGQ 66
>SB_11734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 80 PSLRPRDPPSRIPSLPFRPARSDF 9
P L+PR PP P+ P+RP + F
Sbjct: 339 PVLKPRSPPCSPPNYPWRPRGACF 362
>SB_3605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 629
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 53 MAGHVAAMRERFESMTRANTPCPDLVRSSS 142
+A VAA++ R + +T N P PD S+S
Sbjct: 7 LAATVAALQARIDELTARNAPTPDSSASTS 36
>SB_52753| Best HMM Match : zf-CCHC (HMM E-Value=7.6e-06)
Length = 357
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 53 MAGHVAAMRERFESMTRANTPCPDLVRSSS 142
+A VAA++ R + +T N P PD S+S
Sbjct: 7 LAATVAALQARIDELTAQNAPTPDSSASTS 36
>SB_59295| Best HMM Match : SET (HMM E-Value=0)
Length = 1230
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 65 VAAMRERFESMTRANTPCPDL-VRSSSPTLDVFRITPSPDSL 187
VA + + + A+TP DL + S+SP DV PSP SL
Sbjct: 1022 VAPETDGGDPVENASTPMDDLPLFSASPAADVESFPPSPASL 1063
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,772,941
Number of Sequences: 59808
Number of extensions: 376301
Number of successful extensions: 928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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