Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D12
         (456 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    27   1.4  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    27   1.8  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   3.1  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    24   9.6  

>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 302 VALEIPMMNLLAPSVFPKMF*QTVKATSI 388
           +A  +PM N+    + PK F +T+K T +
Sbjct: 546 IAAPLPMANVDTDKIIPKQFLKTIKRTGL 574


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 340 LGFSQDVLANRQSHEYFSELIHNLNTN 420
           +G S DV+ +   H YF  +I NL  N
Sbjct: 190 VGVSNDVMGSVPHHPYFELIIQNLEKN 216


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = -1

Query: 255  NNVFIFVL--LHLLY*NFISQIVHRIC*VPIIY----YGSGNFFIIRLMRIPRTPIQKYY 94
            NNVF+F+L    L+Y      ++H +  +   +    Y    FF+  + + P  P  KY+
Sbjct: 1073 NNVFLFLLSFYSLIYGAEKPYLIHNVVGLYFFWLLFLYAKNGFFVQNISKWPIIPRMKYF 1132


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 340 LGFSQDVLANRQSHEYFSELIHNLN 414
           +G+S D  A    H +  + IHNL+
Sbjct: 176 IGYSNDWFAATPKHPFLYQAIHNLS 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,775,214
Number of Sequences: 5004
Number of extensions: 33297
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)