Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D12
         (456 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0012 - 7346282-7347136,7347234-7347593                           29   1.8  
01_06_1676 - 39084928-39085016,39085462-39085555,39085664-390857...    29   1.8  
03_05_0003 - 19430085-19430210,19430902-19431060,19431269-194313...    28   4.1  
11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715     27   5.4  
11_02_0011 - 7337618-7338496,7338596-7338991                           27   7.2  
02_04_0058 - 19329380-19330498,19330941-19330988,19331797-19332174     27   7.2  

>11_02_0012 - 7346282-7347136,7347234-7347593
          Length = 404

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 235 NKNENIVISPXXXXXXXXXXXXXSVGNTYDELASALG 345
           N N N+V SP             + G T DEL + LG
Sbjct: 28  NSNRNVVFSPVSLYAALALVASGARGTTLDELVALLG 64


>01_06_1676 -
           39084928-39085016,39085462-39085555,39085664-39085750,
           39085941-39086073,39086451-39086724,39086863-39086989,
           39087095-39087345,39087476-39087575
          Length = 384

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +1

Query: 130 ETNDEKVTTSIINDGNLA---YSVNDLGYKILIQKMQQNKNE 246
           E  D+  ++++I +G+     Y+V D G KI ++K+  N+NE
Sbjct: 68  EKTDDFGSSALIGEGSYGRVYYAVLDSGTKIAVKKLDSNENE 109


>03_05_0003 -
           19430085-19430210,19430902-19431060,19431269-19431358,
           19431433-19431603,19431655-19431797,19431831-19431923,
           19431963-19432279,19432819-19432885,19433039-19433204
          Length = 443

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 112 SSGNSHETNDEKVTTSIINDGNLAYSVND 198
           SSG SH  +DE+  T  + D NL   V D
Sbjct: 90  SSGGSHHGSDEEEVTMPVFDANLLAGVKD 118


>11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715
          Length = 456

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 112 SSGNSHETNDEKVTTSIINDGNLAYSVND 198
           SSG SH  +DE+  T  + D NL   V D
Sbjct: 37  SSGGSHHGSDEEDVTMPVFDANLPAGVKD 65


>11_02_0011 - 7337618-7338496,7338596-7338991
          Length = 424

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 235 NKNENIVISPXXXXXXXXXXXXXSVGNTYDELASALG 345
           + N+N+V SP             + G T DEL + LG
Sbjct: 28  SSNKNLVFSPASLYAALALVAAGARGTTLDELLALLG 64


>02_04_0058 - 19329380-19330498,19330941-19330988,19331797-19332174
          Length = 514

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 346 FSQDVLANRQSHEYFSELIHNLNTND 423
           F++DVL +   H  FS  +  LNT D
Sbjct: 102 FARDVLPHHFKHNNFSSFVRQLNTYD 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,172,323
Number of Sequences: 37544
Number of extensions: 176847
Number of successful extensions: 311
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)