Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D11
         (327 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    29   0.24 
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   0.54 
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   0.54 
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    27   0.72 
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    26   1.3  
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   1.7  
SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        26   1.7  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   2.2  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   2.9  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   2.9  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   3.8  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    24   5.1  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    24   5.1  
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    24   5.1  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    24   6.7  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    24   6.7  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 0.24
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +1

Query: 79  YEFVTPLTSLVVVKPNE--TNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLP 252
           Y   + +  + +V+ N+  T+  + E  ++PA  +++  S+P Y IS+ R  T+ L SLP
Sbjct: 483 YGHTSTIRCIKIVQGNQSTTDTDDVEKENRPASNDAN--SMPPYIISSSRDCTIRLWSLP 540


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 27.5 bits (58), Expect = 0.54
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 167 LFKNLRLHRSLYMIFPTLDQEP*LCNHSQVRN*PQILRTNTNHYLYQPI 313
           L K L+ HR  Y+IF    Q     NH+ ++   +I++T      Y+P+
Sbjct: 88  LLKELKKHRDSYVIFDCPGQVELFTNHNSLQ---KIIKTLEKELDYRPV 133


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 27.5 bits (58), Expect = 0.54
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 79  YEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDISN 216
           Y F+T L+  ++++ +E + +    +++P    S    VPVY IS+
Sbjct: 558 YRFLTQLSKSLLMEISEEDEIYLYELERPYEDGSDDILVPVYHISD 603


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 0.72
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 199 QGPMQTKILEKPVYQQIPRSLHSFHLVSLLPKTSE 95
           +GP+ + I + PV       +H+F L  L+P  SE
Sbjct: 177 EGPVSSSIQDVPVMSTEQPRMHTFSLSELVPLLSE 211


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 202 YDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRFG 324
           Y   NVR  ++ LQSLP+P L        Q  S+P +NR+G
Sbjct: 443 YSTDNVRTDSLDLQSLPTPTLE-------QLESVP-FNRYG 475


>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +1

Query: 73  LKYEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDI----SNVRPGTVAL 240
           L Y+F+  +T   VV P   +     ++       SSF  V +Y I     +V  G VA+
Sbjct: 134 LVYDFIAGITVGCVVVPQGMSYAKVATLPAQYGLYSSFVGVAIYCIFATSKDVSIGPVAV 193

Query: 241 QSLPSPQLTAD 273
            SL + ++ A+
Sbjct: 194 MSLVTSKVIAN 204


>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 263 NCGLGSDCRATVPGLTLEISYTGTD 189
           NC    + +    G+TLE++Y  TD
Sbjct: 412 NCSSEEEAQQVASGVTLEVAYESTD 436


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 148  ESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPS 255
            E +D P  +E S  S+P+ D+SN   G + +   PS
Sbjct: 941  EDIDVP-LREGSLTSIPIDDVSN--SGDITMGEEPS 973


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 234 YGSWSNVGNIIYRDRCKRRFLKSRFINRFRVHCIRFI 124
           Y   + V NI +       +LK+  I+ F + CIRFI
Sbjct: 682 YSGIATVFNITFPPILYGSYLKTSTISPFHLACIRFI 718


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 139 VNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTS 279
           V+   +D P+  E+ F+ + V  + +V     +  + PSP L++  S
Sbjct: 297 VDTPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPAS 343


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 70  ALKYEFVTPLTSLVVVKPNETNAVNAESVDKPAFQESSFASV 195
           A   E  TP  +L V  P + NA N+ +    +     FAS+
Sbjct: 519 ATPLELATPFANLNVSSPLDRNATNSSNTLNGSAMNDYFASL 560


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 177 FLKSRFINRFRVHCIRFIWFHY 112
           + KSR +  F  HCI F+W  Y
Sbjct: 391 YAKSRNLKAFG-HCILFVWIVY 411


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -3

Query: 256 DLGVIAELRFLV*RWKYHIQGPMQTKILEK 167
           + G +  L+ +  + ++H+Q  ++TKIL+K
Sbjct: 720 ETGKLVALKIIRNKKRFHMQALVETKILQK 749


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 178 ILEKPVYQQIPRSLHSFHLVSLLPKTSEV*Q 86
           + +KP+   IP+S    H++++L +  E+ Q
Sbjct: 46  VKDKPISASIPQSSSIEHVLNILDRVGEIKQ 76


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 163 VYQQIPRSLHSFHLVSLLPKTSEV*QIHTSELTLKLSFQDC 41
           V +++P  +H+ HL + L  +        S LT + + +DC
Sbjct: 186 VIRELPIVIHNSHLATCLLHSLSEPPTPASTLTAEAALEDC 226


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 207 IIYRDRCKRRFLKSRFINRFRVH 139
           +IY DR    F  + FIN F +H
Sbjct: 104 LIYLDRIVHHFHFTVFINSFNIH 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,272,287
Number of Sequences: 5004
Number of extensions: 24273
Number of successful extensions: 61
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)