Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D11
(327 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0674 + 19788198-19789817 33 0.053
02_05_0294 + 27609656-27611305 31 0.16
08_02_1468 - 27338052-27339506 31 0.21
09_06_0008 - 20168429-20170054 31 0.28
04_04_0853 + 28745953-28747635 30 0.37
10_06_0029 + 9822216-9823124,9825210-9825329,9826188-9826304,982... 30 0.49
03_02_0251 - 6821612-6823405,6823738-6823878 29 0.65
05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889 29 1.1
08_02_0116 + 12762009-12763021,12763421-12763436 28 1.5
06_03_0454 - 20968052-20969758 27 2.6
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 27 2.6
10_02_0091 - 5190536-5191794,5191878-5192030,5192501-5193099,519... 27 3.5
05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335 27 4.6
04_03_0471 - 16292916-16293209,16294558-16294803,16297557-162976... 27 4.6
05_03_0425 - 13808840-13809414,13809552-13809765,13810268-138113... 26 8.0
>10_08_0674 + 19788198-19789817
Length = 539
Score = 33.1 bits (72), Expect = 0.053
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 290 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 198
W+WYE+ + CGL ++ RATV + + I T
Sbjct: 296 WWWYEIMILLCGLLANPRATVASMGILIQTT 326
>02_05_0294 + 27609656-27611305
Length = 549
Score = 31.5 bits (68), Expect = 0.16
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -2
Query: 290 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 198
W+WYE+ + CGL ++ +ATV + + I T
Sbjct: 323 WWWYEIMILLCGLLANPQATVASMGILIQTT 353
>08_02_1468 - 27338052-27339506
Length = 484
Score = 31.1 bits (67), Expect = 0.21
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 290 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 198
W+WYE+ + CG+ +D +A V + + I T
Sbjct: 244 WWWYEIMVLLCGVLADPKAAVAAMGILIQTT 274
>09_06_0008 - 20168429-20170054
Length = 541
Score = 30.7 bits (66), Expect = 0.28
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 290 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 198
W+WYE+ + CG+ +D +A V + + I T
Sbjct: 297 WWWYEIMVLLCGVLADPKAAVAAMGVLIQTT 327
>04_04_0853 + 28745953-28747635
Length = 560
Score = 30.3 bits (65), Expect = 0.37
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 290 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 198
W+WYE+ + CGL + +ATV + + I T
Sbjct: 322 WWWYEIMILLCGLLLNPQATVASMGILIQTT 352
>10_06_0029 +
9822216-9823124,9825210-9825329,9826188-9826304,
9826387-9826476,9826706-9826756
Length = 428
Score = 29.9 bits (64), Expect = 0.49
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 172 QESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIPAYNRF 321
+ES A+V + S++ PG A + P DT P SIP RF
Sbjct: 156 KESILAAVRLLR-SSISPGNAAAAAAPDADAATDTDTDAAPPSIPTQTRF 204
>03_02_0251 - 6821612-6823405,6823738-6823878
Length = 644
Score = 29.5 bits (63), Expect = 0.65
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 290 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 198
W+WYE+ V GL ++ RATV + + I T
Sbjct: 292 WWWYELMIVLSGLLANPRATVASMGILIQAT 322
>05_01_0524 - 4522488-4523762,4524534-4524644,4524794-4524889
Length = 493
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 299 DNGWYWYEVSAVNCGLGSDCRATVPGLTLEISYTGTDANEDS 174
DN Y +E N +G+ C+AT + SY G + E+S
Sbjct: 109 DNCPYLHEPLTSNDAVGTSCKATTSNPAVSKSYVGDEMVEES 150
>08_02_0116 + 12762009-12763021,12763421-12763436
Length = 342
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -1
Query: 243 LQSYGSWSNVGNIIYRDRCKRRFLKSRFINRFRVHCIRFIWFHYY 109
LQ S + +G I++ D C+ LK + + C R + FH +
Sbjct: 192 LQLQSSLNTLGYIMFDDSCELNCLKDKIFAHSDLPCSRNVIFHIF 236
>06_03_0454 - 20968052-20969758
Length = 568
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 290 WYWYEVSAVNCGLGSDCRATVPGL 219
W+WYEV + CGL + R V +
Sbjct: 318 WWWYEVMILLCGLLPEPRPAVASM 341
>03_04_0157 + 17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 133 NAVNAESVDKPAFQESSFASVPVYDISNVR-PGTVALQSLPS 255
N ++ + P + + F S VYDI NVR G V + PS
Sbjct: 918 NGGHSHDLSLPVLERAMFHSDNVYDIPNVRVNGQVCFTNFPS 959
>10_02_0091 -
5190536-5191794,5191878-5192030,5192501-5193099,
5193771-5193837,5194177-5195170
Length = 1023
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 298 IMVGIGTKYLRLIADLGVIAELRFLV*RWKYHIQGPMQTKILEK 167
I++G+ + + L+ L I +R RWK H Q +QTK K
Sbjct: 606 IIIGLSSGFGMLLLGLSGIVLIR----RWKRHAQKRLQTKYFRK 645
>05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335
Length = 377
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +1
Query: 190 SVPVYDISNVR----PGTVALQSLPSPQLTADTS-YQYQPLSIPA 309
+ P D+++V PG SLPSP + A TS +Q SIP+
Sbjct: 2 AAPKQDVTDVARLGTPGKAFAYSLPSPTVIAPTSCHQLNSASIPS 46
>04_03_0471 -
16292916-16293209,16294558-16294803,16297557-16297692,
16297765-16297983,16298194-16298572,16298967-16299225,
16300044-16300114,16300604-16300625
Length = 541
Score = 26.6 bits (56), Expect = 4.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -3
Query: 211 KYHIQGPMQTKILEKPVYQQIPRSLH 134
+YH++ MQ L++P++ + R+LH
Sbjct: 166 RYHLKTMMQHNDLKQPLFDKFSRALH 191
>05_03_0425 -
13808840-13809414,13809552-13809765,13810268-13811317,
13811616-13811687,13812075-13812334,13812647-13812731
Length = 751
Score = 25.8 bits (54), Expect = 8.0
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +1
Query: 94 PLTSLVVVKPNETNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTAD 273
P + +V+P++ N + ++ +P E+ P DIS V+P A+ + P + A
Sbjct: 669 PPRDIEMVQPDKENQHSDAALVQPD-DEARVEQEPSRDISVVQPNEEAISAKQEPSIDAA 727
Query: 274 T 276
T
Sbjct: 728 T 728
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.128 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,708,799
Number of Sequences: 37544
Number of extensions: 142168
Number of successful extensions: 280
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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