Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D11
         (327 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid deplet...    29   0.79 
U64600-3|AAK39204.1|  656|Caenorhabditis elegans Temporarily ass...    26   7.4  
U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical pr...    25   9.7  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    25   9.7  
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ...    25   9.7  

>AC024791-29|AAL32249.2| 1599|Caenorhabditis elegans Lipid depleted
           protein 3 protein.
          Length = 1599

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 248 SDCRATVPGLTLEISYTGTDANEDS*KAGLSTDSAFTAFV 129
           +DC  T+P LTLE++   T  N D+   G+     F  F+
Sbjct: 783 ADCLLTLPRLTLELTSKRTRDNIDNYVGGIHISGQFKGFM 822


>U64600-3|AAK39204.1|  656|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 312 protein.
          Length = 656

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +1

Query: 142 NAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLSIP 306
           N  SV+      + F SVP++ IS    GT+         L  D ++  Q L  P
Sbjct: 391 NRNSVENFQTSTNVFRSVPLHAISTEEQGTIFGTIEEKTSLILDDAHSLQGLDTP 445


>U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical
           protein C07D10.1 protein.
          Length = 327

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = -3

Query: 193 PMQTKILEKPVYQQIPRSLHSFHLVSLLPKTSEV*QIHTSELTLKLSFQDCFP 35
           P+Q++I  KP+  +  +   S HL+        + +++     ++++ Q CFP
Sbjct: 247 PVQSEIFNKPILTEKNKDNQSIHLLFENCIWETIKELNLLSDIIRIASQFCFP 299


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 212  EISYTGTDANEDS*KAGLSTDSAFTAFVSFGFTTT 108
            EIS TGT  NE    +  S    F  F +F  TTT
Sbjct: 3194 EISSTGTSRNECQFDSIQSGSGGFRLFSNFSNTTT 3228


>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
           protein R52.2 protein.
          Length = 1019

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 172 QESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQPLS 300
           Q S+  ++P Y I      T+ LQ++PS Q +   +   Q L+
Sbjct: 13  QSSNQPTIPTYLIQPSIQSTIPLQTVPSTQQSCQHTLPQQTLA 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,858,288
Number of Sequences: 27780
Number of extensions: 130979
Number of successful extensions: 257
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)