Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D11
         (327 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58340.1 68414.m06636 MATE efflux protein-related contains Pf...    32   0.079
At4g29140.1 68417.m04170 MATE efflux protein-related several hyp...    31   0.14 
At3g51550.1 68416.m05645 protein kinase family protein contains ...    31   0.14 
At4g23030.1 68417.m03321 MATE efflux protein-related contains Pf...    30   0.32 
At5g19700.1 68418.m02343 MATE efflux protein-related contains Pf...    29   0.56 
At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR...    28   1.3  
At2g38510.1 68415.m04732 MATE efflux protein-related contains Pf...    28   1.7  
At5g47000.1 68418.m05793 peroxidase, putative                          27   3.0  
At3g46810.1 68416.m05081 DC1 domain-containing protein contains ...    27   3.0  
At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containi...    27   3.9  
At4g15730.1 68417.m02394 expressed protein                             27   3.9  
At4g35930.1 68417.m05111 expressed protein                             26   6.8  
At4g17690.1 68417.m02642 peroxidase, putative similar to peroxid...    26   6.8  
At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box fami...    26   6.8  
At5g40150.1 68418.m04872 peroxidase, putative identical to perox...    25   9.0  

>At1g58340.1 68414.m06636 MATE efflux protein-related contains Pfam
           profile: PF01554 uncharacterized membrane protein family
           UPF0013
          Length = 532

 Score = 32.3 bits (70), Expect = 0.079
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 290 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 198
           W+WYE   + CGL ++ RATV  + + I  T
Sbjct: 298 WWWYEFMIILCGLLANPRATVASMGILIQTT 328


>At4g29140.1 68417.m04170 MATE efflux protein-related several
           hypothetical proteins - Arabidopsis thaliana; contains
           Pfam profile PF01554: Uncharacterized membrane protein
           family
          Length = 532

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 290 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 198
           W+WYE+  V CGL  + R+TV  + + I  T
Sbjct: 296 WWWYEIMIVLCGLLVNPRSTVAAMGVLIQTT 326


>At3g51550.1 68416.m05645 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 895

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 136 AVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTADTSYQYQP 294
           A++   V+KP + +S    V ++ ++           +P PQ+TAD S   +P
Sbjct: 385 ALHPNPVNKPEYYDSLLNGVEIFKMNTSDGNLAGTNPIPGPQVTADPSKVLRP 437


>At4g23030.1 68417.m03321 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 502

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 290 WYWYEVSAVNCGLGSDCRATVPGLTLEISYT 198
           W+WYE+  + CGL  + +ATV  + + I  T
Sbjct: 273 WWWYEIMILLCGLLLNPQATVASMGILIQTT 303


>At5g19700.1 68418.m02343 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 508

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 305 GIDNGWYWYEVSAVNCGLGSDCRATVPGLTLEISYT 198
           G+   W+WYE+  V CGL  D    V  + + I  T
Sbjct: 271 GVCLEWWWYEIMTVLCGLLIDPSTPVASMGILIQTT 306


>At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1039

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -3

Query: 193 PMQTKILEKP--VYQQIPRSLHSFHLVSLLPKTSEV*QIHTSELTLKLSFQDCFPYSCLR 20
           P + K L KP  +Y  + R++   H+V +  K   +  + +    LKL   D +P   L 
Sbjct: 499 PSEQKFLWKPEEIYDVLARNIFLKHVVDITSKLQLISDVSSITHGLKLLHWDAYPLETLP 558

Query: 19  REYQ 8
             +Q
Sbjct: 559 FSFQ 562


>At2g38510.1 68415.m04732 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 486

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 290 WYWYEVSAVNCGLGSDCRATVPGLTLEISYTG 195
           ++WYE+    CGL  + +A+V  + + I  TG
Sbjct: 247 YWWYEIMLFLCGLLGNPKASVAAMGILIQTTG 278


>At5g47000.1 68418.m05793 peroxidase, putative
          Length = 334

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -3

Query: 178 ILEKPVYQQIPRSLHSFHLVSLLPKTSEV*QIHTSELTLKLSFQDCFPYSC 26
           IL    YQ+     H   +V     T +V Q  T+  TL+L F DCF   C
Sbjct: 32  ILRTDYYQKTCPDFHK--IVREAVTTKQVQQPTTAAGTLRLFFHDCFLEGC 80


>At3g46810.1 68416.m05081 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 686

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -3

Query: 250 GVIAELRFLV*RWKYHIQGPMQTKILEKPVYQQIPRSLHSFHLVSLLPKTS 98
           GV   +  +V  + YH+ GP+ T + E   Y+ +P ++ S  L  ++P TS
Sbjct: 596 GVTLHVSCVVGDFSYHMPGPLSTVVSE---YKMVPPAVVS--LYKVVPNTS 641


>At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 510

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 88  VTPLTSLVVVKPNETNAVNAESVDKPAFQ-ESSFASVPVYDISNVRPGTVALQSLPSPQL 264
           + P+T L +  PN T++    S   P  Q E S +S  + D+S +  G +A+ S    +L
Sbjct: 22  IPPITRLSLPNPNFTSSRFHTSSSLPQSQIEGSISSSLLQDLSIIH-GVIAIASTSQGRL 80

Query: 265 TADTSYQYQPLSIP 306
            + +       S+P
Sbjct: 81  ASVSMCTQYSTSVP 94


>At4g15730.1 68417.m02394 expressed protein
          Length = 1059

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 163 PAFQESSFASVPVYDISNVRPGTVALQSLPSPQLTA 270
           P+ Q SS  +  V  ISN  PG   +Q   SP  T+
Sbjct: 74  PSCQRSSLGNHAVQRISNSLPGKNVVQKFQSPPATS 109


>At4g35930.1 68417.m05111 expressed protein 
          Length = 321

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 124 NETNAVNAESVDKPAFQESSFASVPVYDISNVRPGTVALQSLPSPQ 261
           NE         D  +  +     VPV+DI + R   +A++ L SP+
Sbjct: 48  NELGKKRVPVFDTKSCNDLGKKRVPVFDIKHARNNKMAVEQLNSPK 93


>At4g17690.1 68417.m02642 peroxidase, putative similar to peroxidase
           [Spinacia oleracea] gi|1781336|emb|CAA71495
          Length = 326

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 175 LEKPVYQQIPRSLHSFHLVSLLPKTSEV*QIHTSELTLKLSFQDCFPYSC 26
           L K  YQ+     +     ++ PK  +  Q  T+  TL+L F DCF   C
Sbjct: 26  LTKDYYQKTCPDFNKIVRETVTPKQGQ--QPTTAAGTLRLFFHDCFMEGC 73


>At1g30950.1 68414.m03790 unusual floral organ (UFO) / F-box family
           protein (FBX1) E3 ubiquitin ligase SCF complex F-box
           subunit; almost identical to unusual floral organs
           (UFO)GI:4376159 from [Arabidopsis thaliana]
           Landsberg-erecta; one amino acid difference
          Length = 442

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 227 PGLTLEISYTGTDANEDS*KAGLSTDSA 144
           P LTL  SYT T ++  S     +TDS+
Sbjct: 10  PSLTLPFSYTFTSSSNSSTTTSTTTDSS 37


>At5g40150.1 68418.m04872 peroxidase, putative identical to
           peroxidase ATP26a {Arabidopsis thaliana}
           GP|1890317|emb|CAA72487
          Length = 328

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 79  TSELTLKLSFQDCFPYSC 26
           T+   L+L F DCFP  C
Sbjct: 62  TAAAALRLFFHDCFPNGC 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.128    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,448,666
Number of Sequences: 28952
Number of extensions: 121537
Number of successful extensions: 274
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)