Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D10
         (482 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q75WP3 Cluster: Alginate lyase; n=1; Sphingomonas sp. A...    34   1.5  
UniRef50_A3HYS6 Cluster: Small GTP-binding protein domain; n=1; ...    33   2.6  

>UniRef50_Q75WP3 Cluster: Alginate lyase; n=1; Sphingomonas sp.
           A1|Rep: Alginate lyase - Sphingomonas sp. A1
          Length = 308

 Score = 34.3 bits (75), Expect = 1.5
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -2

Query: 214 LCYC*QYFRHTTGGALRYYPPTSGGTVSHQPHVRS 110
           L Y  QYF   T GA+ ++ PT+GGT ++  + RS
Sbjct: 113 LGYTSQYFYTDTDGAMTFWAPTTGGTTANSSYPRS 147


>UniRef50_A3HYS6 Cluster: Small GTP-binding protein domain; n=1;
           Algoriphagus sp. PR1|Rep: Small GTP-binding protein
           domain - Algoriphagus sp. PR1
          Length = 615

 Score = 33.5 bits (73), Expect = 2.6
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +2

Query: 359 IICS*YKNVRYLDITNSHFSLI*FDYFQLTQCDTRFVT 472
           +I   Y  ++YLD++++HF+ I  D+  LT+ DT  ++
Sbjct: 274 VITKSYHKLKYLDLSHNHFTTIPEDFGNLTELDTLIIS 311


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 491,202,997
Number of Sequences: 1657284
Number of extensions: 9804728
Number of successful extensions: 18833
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18831
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)