Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D10
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0254 - 15377689-15378357,15378807-15379241,15380326-153803...    30   1.1  
11_04_0266 - 15545781-15546266,15546620-15546814                       27   7.9  

>11_04_0254 -
           15377689-15378357,15378807-15379241,15380326-15380370,
           15380675-15381145
          Length = 539

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 219 VTYVTVNNIFATQPAAP*DIIRLHPVGPSLTSHMS 115
           V+ V VNN+   +     +++RLHPV P L +H+S
Sbjct: 377 VSEVQVNNMTYLRAVVK-EVLRLHPVAPLLATHVS 410


>11_04_0266 - 15545781-15546266,15546620-15546814
          Length = 226

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 219 VTYVTVNNIFATQPAAP*DIIRLHPVGPSLTSHMS 115
           V+ V +NN+ A   A   + IRLHPV P L  H+S
Sbjct: 111 VSEVDINNM-AYLRAVIKEGIRLHPVAPVLAPHIS 144


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,945,302
Number of Sequences: 37544
Number of extensions: 266945
Number of successful extensions: 527
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)