Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D10
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical pr...    27   7.1  

>AL022274-1|CAA18357.1|  349|Caenorhabditis elegans Hypothetical
           protein H24D24.1 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 405 FVISR*RTFLY*LHIIVYTTVTIPKYTISKYL---SVCQFVR 289
           FVI+    F+   H+IV T  ++  YTI+ +L   ++C F+R
Sbjct: 34  FVIAVIGVFVNIFHLIVLTRKSLRVYTINIFLIGIAICDFIR 75


>Z81465-3|CAC42253.4|  800|Caenorhabditis elegans Hypothetical
           protein C09F9.3 protein.
          Length = 800

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = -2

Query: 199 QYFRHTTGGALRYYPPTSGGTVSHQPHVRSHGMTI*GSVEPTHTLEFYLLK*TFLILQYN 20
           QY  H   G L          + H P + +  + +   ++PTH++     +  F++ QY 
Sbjct: 248 QYVGHEPSGRLFNEICLDSNNMPHNPLINAGAIVVTSMIKPTHSMAD---RFDFMLKQYR 304

Query: 19  KL 14
           KL
Sbjct: 305 KL 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,642,472
Number of Sequences: 27780
Number of extensions: 248383
Number of successful extensions: 506
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)