Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D10
         (482 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61560.1 68414.m06935 seven transmembrane MLO family protein ...    27   8.8  

>At1g61560.1 68414.m06935 seven transmembrane MLO family protein /
           MLO-like protein 6 (MLO6) idenctical to membrane protein
           Mlo6 [Arabidopsis thaliana] gi|14091582|gb|AAK53799;
           similar to MLO protein SWISS-PROT:P93766,
           NCBI_gi:1877221 [Hordeum vulgare][Barley]; contains Pfam
           profile          PF03094: Mlo family
          Length = 583

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 247 FWLKGEVTLCNLCYC*QYFRHTT 179
           FW K  +TL  +C+  Q+FR  T
Sbjct: 225 FWSKSTITLWIVCFFRQFFRSVT 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,581,683
Number of Sequences: 28952
Number of extensions: 217744
Number of successful extensions: 415
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)