Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D08
         (541 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3UAY0 Cluster: Putative uncharacterized protein; n=1; ...    34   2.4  
UniRef50_UPI0000499D70 Cluster: hypothetical protein 205.t00011;...    32   7.3  
UniRef50_Q180D6 Cluster: Putative membrane protein; n=2; Clostri...    32   9.7  

>UniRef50_A3UAY0 Cluster: Putative uncharacterized protein; n=1;
           Croceibacter atlanticus HTCC2559|Rep: Putative
           uncharacterized protein - Croceibacter atlanticus
           HTCC2559
          Length = 459

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +2

Query: 179 LNDI*NSRKSILIQEIRN--IKFQKETEILL*ISRIVRHSFFIFPLNKIEYIKY 334
           LND+ N  +++LI E  N  I +     I   I +IV +S F F  NKI+YI +
Sbjct: 77  LNDVLNDHRTLLIAERVNKIIAWNSLFSITSTIEKIVYNSLFYFQENKIDYILF 130


>UniRef50_UPI0000499D70 Cluster: hypothetical protein 205.t00011;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 205.t00011 - Entamoeba histolytica HM-1:IMSS
          Length = 884

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 269 ISRIVRHSFFIFPLNKIEYIKYYFLESLISFNGLNFNSQVLPFNIIILTMQ 421
           + + + +SF +FPLN +  IK +  + LI F   N   + L   I+ L +Q
Sbjct: 65  LQKRLMYSFDLFPLNMLNGIKDFIFQKLIQFKTNNLIVKQLSLCIVALALQ 115


>UniRef50_Q180D6 Cluster: Putative membrane protein; n=2;
           Clostridium difficile|Rep: Putative membrane protein -
           Clostridium difficile (strain 630)
          Length = 147

 Score = 31.9 bits (69), Expect = 9.7
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +2

Query: 173 IKLNDI*NSRKSILIQEIRNIKFQKETEILL*ISRIVRHSFFIFPLNKIEYIKYYFLESL 352
           IKLN+I    ++I I  I  I   K     L +  +      +  L KI+YIKYY+++S+
Sbjct: 78  IKLNEIKKIYETIGINSITKISIDKNK---LEMEGVCSDLDVLNNLRKIKYIKYYYIDSI 134

Query: 353 I 355
           +
Sbjct: 135 V 135


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 402,576,385
Number of Sequences: 1657284
Number of extensions: 6799468
Number of successful extensions: 15705
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15694
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)