Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D08
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   5.4  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    25   7.2  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    25   7.2  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   9.5  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 522 QSNKSILI-NLIYSNLMMTSSF*ISAIFLK*ESTNCIVSIIIL 397
           +SNK  LI NL+Y NL  +  +  S  FLK  +    VSI+ +
Sbjct: 368 RSNKGQLIRNLLYPNLRPSQLYLDSMSFLKTMAILSFVSIVFI 410


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +2

Query: 299 IFPLNKIEYIKYYFLESLISFNGLN-FNSQV 388
           ++ +NKI+ I   FLE++I  NG+N F+S V
Sbjct: 4   LYQVNKIKEILIRFLETII-INGMNSFSSTV 33


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 314 KIEYIKYYFLESLISFNGLNFNSQVL-PFNIIILTMQ 421
           K+E  + Y+  +  SFN L  NS+ L P N  ++  +
Sbjct: 343 KVELFRTYYFVTFRSFNQLPSNSEYLKPLNFYLVVFR 379


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -2

Query: 357 LIKDSRK*YFMYSILFKGKIKKLCRTILEIYN 262
           +I+D +  Y + +++  GK + LCR   + +N
Sbjct: 307 MIRDDQYWYLVRAVMSDGKHRNLCRYYEDFFN 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,191
Number of Sequences: 5004
Number of extensions: 32915
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)