Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D08
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0498 - 18342517-18342960,18343164-18343397,18343569-183437...    27   9.6  

>10_08_0498 -
           18342517-18342960,18343164-18343397,18343569-18343781,
           18344095-18344238,18344348-18344470,18345094-18345169,
           18345252-18345355,18345745-18345819,18345942-18346106,
           18346248-18346346,18346478-18346677,18346767-18346846,
           18346922-18347049,18347936-18348048,18348580-18348672,
           18349264-18349348,18350116-18350233,18350326-18350399,
           18350485-18350537,18350624-18350804,18351219-18351264,
           18351355-18351432,18351556-18351626,18351735-18351798,
           18352064-18352071
          Length = 1022

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 22/90 (24%), Positives = 38/90 (42%)
 Frame = +2

Query: 152 YYNRNF*IKLNDI*NSRKSILIQEIRNIKFQKETEILL*ISRIVRHSFFIFPLNKIEYIK 331
           +Y R   +    +   R  I++ E+R++     TE LL + +  R     F  +  E + 
Sbjct: 110 HYERGKGVVSTQLIGERAQIILDEVRDLSLFTRTECLLHLGKYFRSVMEGFEKDDFETVA 169

Query: 332 YYFLESLISFNGLNFNSQVLPFNIIILTMQ 421
              L+  I F  L  N     FN++I  +Q
Sbjct: 170 EAVLKDYI-FVHLQNNHD--KFNLLIFMLQ 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,498,268
Number of Sequences: 37544
Number of extensions: 141076
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)