Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D08
         (541 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)                 31   0.60 
SB_15051| Best HMM Match : 7tm_1 (HMM E-Value=4e-06)                   30   1.1  
SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)                  30   1.1  
SB_57851| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_17657| Best HMM Match : HIN (HMM E-Value=0.58)                      28   4.2  
SB_4836| Best HMM Match : 7tm_1 (HMM E-Value=1e-37)                    28   5.6  
SB_40777| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_34720| Best HMM Match : Fibrinogen_C (HMM E-Value=7.8e-13)          27   7.4  

>SB_27413| Best HMM Match : 7tm_1 (HMM E-Value=6.5e-08)
          Length = 646

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 279 ILEIYNKISVSF*NFIFRISCINIDLREFQ 190
           ILE+ +K  V F N  F++ C+N+D R FQ
Sbjct: 175 ILELKDKSFVLFENIGFKLKCVNLDKRCFQ 204


>SB_15051| Best HMM Match : 7tm_1 (HMM E-Value=4e-06)
          Length = 403

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 279 ILEIYNKISVSF*NFIFRISCINIDLREFQ 190
           ILE  +K  V F N  F++ C+N+D R FQ
Sbjct: 56  ILEFKDKSFVLFENIGFKLKCVNLDKRCFQ 85


>SB_9691| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-08)
          Length = 419

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 279 ILEIYNKISVSF*NFIFRISCINIDLREFQ 190
           ILE  +K  V F N  F++ C+N+D R FQ
Sbjct: 56  ILEFKDKSFVLFENIGFKLKCVNLDKRCFQ 85


>SB_57851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 279 ILEIYNKISVSF*NFIFRISCINIDLREFQ 190
           ILE  +K  V F N  F++ C+N+D R FQ
Sbjct: 100 ILEFKDKSFVLFENIGFKLKCVNLDKRCFQ 129


>SB_51246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 279 ILEIYNKISVSF*NFIFRISCINIDLREFQ 190
           ILE  +K  V F N  F++ C+N+D R FQ
Sbjct: 137 ILESKDKSFVLFENIGFKLKCVNLDKRCFQ 166


>SB_17657| Best HMM Match : HIN (HMM E-Value=0.58)
          Length = 414

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 305 PLNKIEYIKYYFLESLISFNGLNFNSQVLPF 397
           PLN++E+ +  F E+ +S + L+   Q++PF
Sbjct: 66  PLNRVEFFREIFEEAGMSLSSLSNMRQLIPF 96


>SB_4836| Best HMM Match : 7tm_1 (HMM E-Value=1e-37)
          Length = 338

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +1

Query: 34  LYVIRYIDICYKYRYDKIVYGFRVSF*IRMTYAFESAF*LL 156
           L V RYI +   +RY  IV  FRV   +   +AF   F LL
Sbjct: 107 LMVDRYIAVSRAFRYRTIVTSFRVRISLVAIWAFALHFALL 147


>SB_40777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +2

Query: 200 RKSILIQEIRNIKFQKETEILL*ISRIVRHSFFIFPLNKIEYIKYYFLESLISFNGLN 373
           R+ I +Q +   +    T  +    + V+ +F++F L    Y+ Y     L+ F GLN
Sbjct: 202 RRQIQVQSLAVSETSDGTNTMRRNRKSVKGTFYVFLLFLFCYVPYILCSGLVFFLGLN 259


>SB_34720| Best HMM Match : Fibrinogen_C (HMM E-Value=7.8e-13)
          Length = 168

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = -2

Query: 537 YNKQHQSNKSILINLIYSNLMMTSSF*ISAIFLK*ESTNCIVSIII 400
           YN QHQ + S+++N+  S +++ +    +   +   + + I++III
Sbjct: 114 YNDQHQHHHSLVVNITISTIVIVTIVIFNTTVIYIITISFIINIII 159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,247,835
Number of Sequences: 59808
Number of extensions: 194354
Number of successful extensions: 284
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)