Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D08
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U50300-4|AAC48111.1|  351|Caenorhabditis elegans Serpentine rece...    27   6.5  
AF016681-6|AAB66175.2|  317|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.5 protein.
          Length = 358

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +2

Query: 338 FLESLISFNGLNFNSQVLPFNIIILTMQLV----DSYFKNM 448
           F++S +SFN L FN Q+LP   +    + +    D YFK +
Sbjct: 313 FVKSYLSFNCLKFNQQILPMETVECQRKKLDIETDLYFKQL 353


>U50300-4|AAC48111.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein201 protein.
          Length = 351

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +2

Query: 182 NDI*NSRKSILIQEIRNIKFQKETEILL*ISRIVRHSFFIFPL--NKIEYIKYYFLESLI 355
           N I   ++  + Q+  N+  QK+  I L I   V  +FF+FPL    +  IK Y+ ++++
Sbjct: 229 NSIQQLKQKTMSQKTYNM--QKKLLIALVIQSFVPMTFFMFPLVYGMVVVIKEYYNQAIV 286

Query: 356 SFNGLN 373
           +   +N
Sbjct: 287 NILFIN 292


>AF016681-6|AAB66175.2|  317|Caenorhabditis elegans Hypothetical
           protein F22E5.11 protein.
          Length = 317

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 272 KFIIKFQFLFETLYFVFLVLILIYVNFKCH*VLFKSS 162
           KFI+    +   L  +FL+L ++ V F  H +LF +S
Sbjct: 46  KFIMSIVIMILLLKLIFLILFIVLVVFTLH-ILFTNS 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,946,562
Number of Sequences: 27780
Number of extensions: 176727
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)