Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0001_D08
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44070.1 68418.m05392 phytochelatin synthase 1 (PCS1) identic...    27   6.1  
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain...    27   8.0  

>At5g44070.1 68418.m05392 phytochelatin synthase 1 (PCS1) identical
           to phytochelatin synthase [Arabidopsis thaliana]
           gi|18254401|gb|AAL66747;  identical to cDNA
           phytochelatin synthase, GI:18254400
          Length = 485

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = -2

Query: 288 CRTILEIYNKISVSF*NFIFRISCINIDLREFQMSLSFI*KFXXXXLKCRFKSICHSYS 112
           C   LE+  +  +SF   +    C    +  F+ S S I  F    +KC     CH  S
Sbjct: 90  CCEPLEVVKEKGISFGKVVCLAHCSGAKVEAFRTSQSTIDDFRKFVVKCTSSENCHMIS 148


>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
           protein similar to Sin3 protein [Yarrowia lipolytica]
           GI:18076824; contains Pfam profile PF02671: Paired
           amphipathic helix repeat
          Length = 1173

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 137 NRHFSYYNRNF*IKLNDI*NSRKSILIQEIRNIKFQKETEILL 265
           N H S  +R+F  K  D  N     L+ E+++I  +K  E LL
Sbjct: 519 NHHKSLDHRSFYFKQQDSKNLSTKCLVAEVKDISEKKHQEDLL 561


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,780,044
Number of Sequences: 28952
Number of extensions: 143654
Number of successful extensions: 224
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)