Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0001_D07
(286 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.60
SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.79
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16) 28 1.4
SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.4
SB_41909| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23) 27 1.8
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_44915| Best HMM Match : VWA (HMM E-Value=0) 27 2.4
SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32) 27 2.4
SB_39378| Best HMM Match : VWA (HMM E-Value=0) 27 2.4
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062) 27 2.4
SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3) 27 3.2
SB_20719| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40) 27 3.2
SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.2
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33) 26 5.6
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_30667| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2) 26 5.6
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 26 5.6
SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063) 26 5.6
SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08) 26 5.6
SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1) 26 5.6
SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12) 25 7.4
SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.4
SB_54002| Best HMM Match : POP1 (HMM E-Value=0) 25 7.4
SB_38537| Best HMM Match : VWA (HMM E-Value=0) 25 7.4
SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18) 25 7.4
SB_31713| Best HMM Match : PSP1 (HMM E-Value=4.4) 25 7.4
SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25) 25 7.4
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 25 7.4
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 25 9.8
SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18) 25 9.8
SB_53317| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 25 9.8
SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05) 25 9.8
SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014) 25 9.8
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 29.1 bits (62), Expect = 0.60
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +2
Query: 116 PDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDKPS 241
P P SQP P +PI T PA HP PP R KP+
Sbjct: 1077 PPPSTSQPVPPPR-QPDPIPTNPA-----HPTEPPPRQPKPT 1112
>SB_8894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 28.7 bits (61), Expect = 0.79
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 191 VDFNHPNYPPKRYDK 235
VD NHPNY P+ Y+K
Sbjct: 32 VDLNHPNYLPETYNK 46
>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
Length = 228
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = +2
Query: 59 VDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDKP 238
VD+SGV D S +V A +P FSQ S G P+ P ++ + YD+
Sbjct: 161 VDSSGVAGDQRSSLLVSATLNPLFSQ-SLGSVSFGIPLIPSPTLPSTEKDSF--QEYDQL 217
Query: 239 SRP 247
S P
Sbjct: 218 SPP 220
>SB_49511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = +2
Query: 59 VDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDKP 238
VD+SGV D S +V A +P FSQ S G P+ P ++ + YD+
Sbjct: 90 VDSSGVAGDQRSSLLVSATLNPLFSQ-SLGSVSFGIPLIPSPTLPSTEKDSF--QEYDQL 146
Query: 239 SRP 247
S P
Sbjct: 147 SPP 149
>SB_41909| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 890
Score = 27.5 bits (58), Expect = 1.8
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = +2
Query: 119 DPFFSQPSN---GPSGNYEPI---STGPAFVDFNHPNYPPKRYDKPSRP 247
DPFF PS+ GPS P+ S G +F F+ + PP + SRP
Sbjct: 89 DPFFGPPSDGGFGPSDRGSPVPRPSCGSSF--FSERDPPPGKGSPGSRP 135
>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
Length = 1178
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 194 DFNHPNYPPKRYDKPSRPWW 253
D HP PP R PS PW+
Sbjct: 59 DDEHPYTPPGRRQVPSEPWY 78
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 116 PDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDKPSRP 247
P+P + P N P Y P P + +P YPP Y P P
Sbjct: 128 PNPPYPPPPNAP---YPPSPNAP-YPPPPNPPYPPPLYPPPPNP 167
>SB_16460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 194 DFNHPNYPPKRYDKPSRPWW 253
D HP PP R PS PW+
Sbjct: 103 DDEHPYTPPGRRQVPSEPWY 122
>SB_44915| Best HMM Match : VWA (HMM E-Value=0)
Length = 541
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 104 VIANPDPFFSQP-SNGPSGNYEPISTG 181
VIA PDP S+P +NG G PIS+G
Sbjct: 258 VIAEPDPCLSKPCANG--GTCSPISSG 282
>SB_13163| Best HMM Match : VWA (HMM E-Value=2.3e-32)
Length = 318
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 104 VIANPDPFFSQP-SNGPSGNYEPISTG 181
VIA PDP S+P +NG G PIS+G
Sbjct: 54 VIAEPDPCLSKPCANG--GTCSPISSG 78
>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
Length = 2865
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 104 VIANPDPFFSQP-SNGPSGNYEPISTG 181
VIA PDP S+P +NG G PIS+G
Sbjct: 409 VIAEPDPCLSKPCANG--GTCSPISSG 433
>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
Length = 406
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +2
Query: 131 SQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDKPSRP 247
S PS+ + P P++ + HP +P Y PS P
Sbjct: 107 SYPSSHIQASLLPHIQHPSYPTYKHPPFPHPTYKHPSYP 145
>SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3)
Length = 173
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 88 AVRWNTTIVHHVNSVCGSHGQY 23
A RW T H+ +CG HG+Y
Sbjct: 55 ATRWTTN--HNCYHICGHHGRY 74
>SB_20719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 74 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 229
+P DGN IAN D PSN P ++ + A V+ +PP Y
Sbjct: 87 IPEDGNGCAAYIANVD-----PSNKPGSHWLAVYFTYANVNGESFRFPPHAY 133
>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
Length = 2057
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +2
Query: 122 PFFSQPSNGPSGNYE--PISTGPAFVDFNHPNYPPKRYDKPS 241
P FS PS G Y+ P+ T P+ +Y P D PS
Sbjct: 43 PLFSDPSMTRIGTYDYRPLFTDPSMTRIGTYDYRPLFTDDPS 84
>SB_3457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 98 GHYCRPMEHHYCPPRELCLR 39
GH C+P CPP C+R
Sbjct: 805 GHQCQPDTCDSCPPNSHCMR 824
>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = +2
Query: 71 GVPSDGNSDHVVIA-NPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDKP 238
G P+D +H + PF P P P P + F PN+PP + +P
Sbjct: 252 GGPTDQRRNHEGDPYHGGPFNQAPPGFPPRWGPPPHMPPDYRGFPPPNFPPPDFSRP 308
>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 799
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 74 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRYDK 235
+P DGN D I N D PS+ P ++ + P + ++ +PP Y +
Sbjct: 33 IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAYGR 82
>SB_48207| Best HMM Match : Peptidase_C5 (HMM E-Value=0.33)
Length = 184
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 74 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRYDK 235
+P DGN D I N D PS+ P ++ + P + ++ +PP Y +
Sbjct: 33 IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAYGR 82
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 89 NSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKR-YDKPSRPW 250
+SD ++++ F S + S + +S+ F+ P+YPP + Y P+ P+
Sbjct: 33 SSDTTLLSSDTTFLSSDTIFLSSDTTLLSSDRTFLSPTQPSYPPTQPYYPPTAPF 87
>SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 149 PSGNYEPISTGPAFV-DFNHPNYP-PKRYDK 235
PS + P+STG +FV D N P P P R D+
Sbjct: 843 PSAGFTPLSTGLSFVFDENIPPPPVPPRRDE 873
>SB_30667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 108
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 74 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRYDK 235
+P DGN D I N D PS+ P ++ + P + ++ +PP Y +
Sbjct: 33 IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAYGR 82
>SB_30449| Best HMM Match : DUF566 (HMM E-Value=1.2)
Length = 415
Score = 25.8 bits (54), Expect = 5.6
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 113 NPDPFFSQPSNGPSGNYEPISTGPA--FVDFNHPNYPPKRYDKPSRPWWEVN 262
NP F Q SN PS ++ S P+ F F+ PN ++ ++ S P +VN
Sbjct: 3 NPSSHFGQ-SNNPSSHFGQ-SNNPSSHFGQFSRPNSHFEQTNRHSNPSSQVN 52
>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
Length = 1514
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 74 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRYDK 235
+P DGN D I N D PS+ P ++ + P + ++ +PP Y +
Sbjct: 1217 IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAYGR 1266
>SB_16799| Best HMM Match : Extensin_2 (HMM E-Value=0.063)
Length = 597
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 116 PDPFFSQPSNGPSGNYE-PISTGPAFVDFNHPNYPPKRYDKP 238
P P S P P+ + P+ +G FV P PP + DKP
Sbjct: 229 PKPARSSPK--PAAEFRSPLESGSNFVIKPAPGEPPPKPDKP 268
>SB_11244| Best HMM Match : M (HMM E-Value=2.5e-08)
Length = 1381
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 116 PDPFFSQPSNGPSGNYE-PISTGPAFVDFNHPNYPPKRYDKP 238
P P S P P+ + P+ +G FV P PP + DKP
Sbjct: 174 PKPARSSPK--PAAEFRSPLESGSNFVIKPAPGEPPPKPDKP 213
>SB_10450| Best HMM Match : Peptidase_C5 (HMM E-Value=1.1)
Length = 245
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 74 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRYDK 235
+P DGN D I N D PS+ P ++ + P + ++ +PP Y +
Sbjct: 33 IPEDGNGDAAYIVNVD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAYGR 82
>SB_15993| Best HMM Match : RVT_1 (HMM E-Value=7.2e-12)
Length = 769
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 176 TGPAFVDFNHPNYPPKR 226
T AF D +PN+PP+R
Sbjct: 114 TNEAFFDLLNPNFPPER 130
>SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/40 (32%), Positives = 16/40 (40%)
Frame = +2
Query: 122 PFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDKPS 241
P F+ P N P P + P +N YPP PS
Sbjct: 167 PGFAPPGNYPPPPAPPPAYPPVTQGYNMSQYPPPDVAPPS 206
Score = 25.0 bits (52), Expect = 9.8
Identities = 18/65 (27%), Positives = 23/65 (35%)
Frame = +2
Query: 53 HVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYD 232
HV +G PS + I P P P G + +Y P T + PP Y
Sbjct: 120 HVGGTAGTPSFATT---TINYPPPGPQAPPPGSTVHYPPPQTTMGYPSAQPGFAPPGNYP 176
Query: 233 KPSRP 247
P P
Sbjct: 177 PPPAP 181
>SB_54002| Best HMM Match : POP1 (HMM E-Value=0)
Length = 886
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 59 VDNSGVPSDGNSDHVVIANPDPFFSQPSNG 148
VDN D NSD V + + F ++PS G
Sbjct: 375 VDNKPSKKDSNSDRVKVDSDFEFVAKPSCG 404
>SB_38537| Best HMM Match : VWA (HMM E-Value=0)
Length = 1174
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 152 SGNYEPISTGPAFVDFNHPNYPPKRYDKPSRPWWEVNVS 268
SG Y + T P F N PN + + P++P++ + S
Sbjct: 953 SGRYYEVPTQPYFHTDNSPNRFDRYNEVPTQPYFHTDNS 991
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 152 SGNYEPISTGPAFVDFNHPNYPPKRYDKPSRPWWEVNVS 268
SG Y + T P F N PN + + P++P++ + S
Sbjct: 899 SGRYYEVPTQPYFHTDNSPNRFGRYNEVPTQPYFHTDNS 937
>SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)
Length = 427
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -1
Query: 253 PPRP---RRFVVSLGWIIGMIEIDERRSSAYGFI 161
PP P R ++S GWI+ IEI+ R S +I
Sbjct: 134 PPVPGIIRAQIMSSGWIVEPIEINGRECSMVWYI 167
>SB_31713| Best HMM Match : PSP1 (HMM E-Value=4.4)
Length = 159
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Frame = +2
Query: 137 PSNGP-----SGNYEPISTGPAFVDFNHPNYPPKRYDKPSRP 247
P NGP +G P GP + N P YPP +KP P
Sbjct: 6 PVNGPVYPSVNGPVYPSVNGPVYPPVNGPVYPP--VNKPVYP 45
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 143 NGPSGNYEPISTGPAFVDFNHPNYPP 220
NGP Y P++ GP + N P YPP
Sbjct: 24 NGPV--YPPVN-GPVYPPVNKPVYPP 46
>SB_31260| Best HMM Match : rve (HMM E-Value=5.2e-25)
Length = 1962
Score = 25.4 bits (53), Expect = 7.4
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 74 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVD-FNHPNYPPKRYDK 235
+P DGN D I N D PS+ P ++ + P + ++ +PP Y +
Sbjct: 1811 IPEDGNGDAAYIVNLD-----PSDKPGSHWLAVYFTPDHCEWWDSFGFPPSAYGR 1860
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 25.4 bits (53), Expect = 7.4
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 113 NPDPFFSQPS-NGPSGNY-EPISTGPAFVDFNHPNYPPKRYDKPSRPWWE 256
+P P +S P+ P+ Y P STG A D + KRYD W E
Sbjct: 293 HPPPAYSNPTYQPPASTYPPPTSTGMAAAD--QKDETLKRYDINGGDWKE 340
>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 403
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 137 PSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDKP 238
P++ PS Y+P+ P + PP Y KP
Sbjct: 144 PTSPPSYPYKPLPRIPTSLSLKSLQAPPSYYYKP 177
>SB_55050| Best HMM Match : Alpha_L_fucos (HMM E-Value=2.4e-18)
Length = 203
Score = 25.0 bits (52), Expect = 9.8
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Frame = +2
Query: 122 PFFSQPSNGPSGNY---EPISTGPAFVDFNHPNYPP 220
P F S G +G + PAFV+F NYPP
Sbjct: 58 PSFGAESGGTAGEWFWRYWHDGNPAFVNFMKKNYPP 93
>SB_53317| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 571
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 253 PPRPRRFVVSLGWIIGMIEIDERRSSAYGFI 161
P RPR FV+ W G+ +I + YG +
Sbjct: 70 PKRPRYFVLPSSWFYGIPDIVIDVTPVYGTV 100
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 25.0 bits (52), Expect = 9.8
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +2
Query: 83 DGNSDHVVIANPDPFFSQPSNGPSGN--YEPISTGPAFVDFN-HPNYPPK 223
D H ++ + + Q +GN Y I VD N HP YPPK
Sbjct: 41 DNTIFHRIVKGGENIYGQSGFKVTGNTIYNMIKMADMEVDDNDHPLYPPK 90
>SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 790
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 107 IANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDKPSR 244
IAN P F + NY P+ G ++ P P D+PSR
Sbjct: 690 IANVVPIFKKGKRSSPNNYRPVVYGTVDIE-REPFLVP--MDRPSR 732
>SB_42291| Best HMM Match : Tyrosinase (HMM E-Value=0.0014)
Length = 406
Score = 25.0 bits (52), Expect = 9.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = +3
Query: 6 CFSSSPYWPWLPQTEFTWWTI 68
C + PYW W Q W T+
Sbjct: 218 CRVTIPYWQWTAQAGHLWRTL 238
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,720,825
Number of Sequences: 59808
Number of extensions: 200456
Number of successful extensions: 554
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 303237528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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